Gene Pcal_1677 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1677 
Symbol 
ID4909533 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1564890 
End bp1565567 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content53% 
IMG OID640125424 
Producthypothetical protein 
Protein accessionYP_001056560 
Protein GI126460282 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.00018407 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGGGCTGG GCTCCTCTTG GCGCGTGGTG TATGAATCGT ACAAGAAGAT TGTGAAGTTC 
TACGAGCGGG CTAACCTACT CGTGACGTTT GGAAACGTCG ATAGGTGGAG GCGTGAGGCG 
ATTGGCCTCT TCTATCAGTT GGATGGGAAA AACCCCCTAC GCGTCCTTGA CGCAGGGGCT 
GGGCCTGGGA ACATGGCCAG GCATATAAGG GGGGTGAAGT ACGTCGTGGC GTTGGATGCC 
ACAGCGGAGA TGCTTCGCGC AAACGACGTG GCCGACGACA AAGTCGTCGG GCTTTTTGAA 
TATATGCCGT TTAGGTCTAG ATGCTTCGAC GTAGTACTAG CTGGCTACTC TCTACACGCC 
GCTGTGGATT TTGAAAAGGC AGTAGCCGAA TTCAGCAGAG TGGCCGAATA CCAAGTGGCC 
GTGTCTATAG GCAAGCCGGA CAACATAATA GCGCGGGGGC TCCTGTACTT CTATACGAGG 
TACATACTCC CCAGACTGGC TTGCATAGTG GCGCCCAGGG GCGTCTGCGA CGAATACGGA 
AAGATATTTG TTATAGTGAA GTCGCAAATG CCCAATTCCC TTGTTAAGAG GACTATTGAG 
AAGTATGCGA CAAGTCTTGT GTTTAAGACG AGAGGTCTTG GGGGCGTTTA TATGTACGTA 
GCAAAGAGTA GGAGGTAG
 
Protein sequence
MGLGSSWRVV YESYKKIVKF YERANLLVTF GNVDRWRREA IGLFYQLDGK NPLRVLDAGA 
GPGNMARHIR GVKYVVALDA TAEMLRANDV ADDKVVGLFE YMPFRSRCFD VVLAGYSLHA 
AVDFEKAVAE FSRVAEYQVA VSIGKPDNII ARGLLYFYTR YILPRLACIV APRGVCDEYG 
KIFVIVKSQM PNSLVKRTIE KYATSLVFKT RGLGGVYMYV AKSRR