| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1674 |
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| Symbol | |
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| ID | 4910302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1562554 |
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| End bp | 1563741 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640125421 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001056557 |
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| Protein GI | 126460279 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01910] acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000241888 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATGAGG CTATCTCTCT CCTAAGCAAG CTGATTTCCA TACCTACGGT TAATCCGCCG
GGGGAGAAGT ACCAGGAGTT CGTAGAATTC GCTGAGAGGT TCTTCAAATC CCTCGGCATG
GAGACCGAGG TCTTAGAGGT GCCTAAGTCC GAGGTGGCGG CGCGGTGCCC CGAGTGCGCA
GACTACCCCA GGCTCATCCT ACTCGCCCGC ATAGGTGAGC CAAAGATACA CTTCAACGGC
CACTACGACG TAGTGCCCCC CGGCCCCTTG GAGAGCTGGA AGGTGACAAG GCCATTTGAG
CCCGTCTATA GAGACGGCAG ACTCTACGGA AGAGGCGCCG TGGACATGAA GGGCGGCCTC
GCGGCCATTA TGCTCGCGGC CGAGCGGGCC GTAAAGGCGG GGTTAAAGAA CTTTGAAGTC
TCCTTTGTAC CCGACGAGGA AATTGGCGGA GAGACGGGGG CCGGCTACCT CGCGAGATCT
GGAAAGGTAA AGGCTCCGTG GGTGATAATC GCCGAGGGGT CGGGCGAGGA CAACGTCTGG
ATTGGGCATA GGGGGCTTGT GTGGTTCCTC GTTGAGGTCT ACGGCAAACA AGCCCACGGA
TCTACTCCGT GGCTGGGCTT AAACGCCTTT GAAGGCGCCG CCTACATCGC CTACAGGCTG
AGGGAATATG CAAAGGAGGT CTCCGCCCGT GTGAGCAAGT ACGAATACGA CGATCCCAGG
GCGGCGTCGC CCACTGTGAC CATCGGCGGC GAGGTGCGGG GCTCTGTGAA GACCAACGTG
GTGCCGGGGT ACTTCGCCTT CTCAGTAGAC AGGAGAGTGA TCCCCGAGGA GGACTTGGAA
CAAGTGAAGC GCGAGTTCAT CGAATTTGTA GAGAGAGTGG CAAAGGAGCT TCCACACCGA
GTTGAGGTTA AGGTAACCAA TGTGTCAGAG GCGGCGCTCA TCGAACCCAC TCACCCGCTG
GTGGAGGCCC TCTCCAGCTC CGTGGAGGAG GTGATAGGGA GGAAGCCAAG GCGCACTGTG
TGCGTCGGCG GCTTAGACGC CAGGTTCTTC ATTAAGGCCG GCATACCCAC TGTGACATAT
GGCCCAGGTC CAATAGGCCT AGCCCACGCC CCCGACGAAT ATGTAGAGGT GAGGCAGGTA
GTCAACGTGG CCCAAGTGTA CTTCAACCTT TTGAAAAAAC TGAGGTAG
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| Protein sequence | MDEAISLLSK LISIPTVNPP GEKYQEFVEF AERFFKSLGM ETEVLEVPKS EVAARCPECA
DYPRLILLAR IGEPKIHFNG HYDVVPPGPL ESWKVTRPFE PVYRDGRLYG RGAVDMKGGL
AAIMLAAERA VKAGLKNFEV SFVPDEEIGG ETGAGYLARS GKVKAPWVII AEGSGEDNVW
IGHRGLVWFL VEVYGKQAHG STPWLGLNAF EGAAYIAYRL REYAKEVSAR VSKYEYDDPR
AASPTVTIGG EVRGSVKTNV VPGYFAFSVD RRVIPEEDLE QVKREFIEFV ERVAKELPHR
VEVKVTNVSE AALIEPTHPL VEALSSSVEE VIGRKPRRTV CVGGLDARFF IKAGIPTVTY
GPGPIGLAHA PDEYVEVRQV VNVAQVYFNL LKKLR
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