Gene Pcal_1645 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1645 
Symbol 
ID4909834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1534653 
End bp1535258 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content58% 
IMG OID640125392 
Producthydrolase 
Protein accessionYP_001056528 
Protein GI126460250 
COG category[R] General function prediction only 
COG ID[COG1011] Predicted hydrolase (HAD superfamily) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGTAA TCACAAGCTT CTGGGGCCTC TTGGCACAGC CGGTGGACTT CTGGGAGGAG 
CTAAAGGCTA CGGTGGGCAA CGACGGCGCC GTGGAGCAAG TGAGAGTCGT CGTGGAGGAG 
ATCAGGGCCA CCGGGGTGGA AGTGCCACTA CGGTCTGTAA TAAGCGCAGT GGCACACATG 
GCGGGCTTGG AGGCAAGGGA GATGTGGAAT AGGTATGTGG CCCAAGTGTC GGGCAAGATC 
AGGGAGACAC CTTGCGCCGT GGAGTTTATC AAGTGGGCCT CCAGCGCGGG AAAAGTGGCG 
ATACTCTCTA ACACGCCCTG CAAATGCTTC ATCACGGCCT TCTTAGAGGC CCACGGCTTG 
AGGGTGAACC TCGTGCTCAC CTCAGACGTC TTGCTTAAGA GAAAGCCCCT CAAGTCGGTG 
TTTAAGTACG CGCTGAGGCG TCTGGGAGCC GAGGCGCGCG ACACCGTGTA CGTGGGCGAC 
AGCGAGGAGG ACCTAGGCGC AATGGCCCTG GGAATGTTGA CCATAATCGT GGGCAAAGAG 
GGCGGACACG TCAGCTTTAA CGACCTCTGC CAGGCGAAGA GCTGGCTTGA GCAGATTTTT 
AAGTAG
 
Protein sequence
MNVITSFWGL LAQPVDFWEE LKATVGNDGA VEQVRVVVEE IRATGVEVPL RSVISAVAHM 
AGLEAREMWN RYVAQVSGKI RETPCAVEFI KWASSAGKVA ILSNTPCKCF ITAFLEAHGL 
RVNLVLTSDV LLKRKPLKSV FKYALRRLGA EARDTVYVGD SEEDLGAMAL GMLTIIVGKE 
GGHVSFNDLC QAKSWLEQIF K