| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1608 |
|---|
| Symbol | |
|---|
| ID | 4908979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1497319 |
|---|
| End bp | 1499400 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640125355 |
|---|
| Product | glutamate synthase (NADPH) GltB2 subunit |
|---|
| Protein accession | YP_001056491 |
|---|
| Protein GI | 126460213 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCTA AGCTTGTCGT TGTAAAAAGC TACATACCCC CGGCACGTCA CAGAGTGCCG
GAGTTCTGGG ACGAGGAGAA GATCAACTAC GTCCGCGCCT CATCGCAGAG CGGCTTGCCG
CCGTATGCCC TAAGCGAGCC GCGGAGAGTT GGCAGACTCC TAGACCGCAT CTCGTTCAAG
GATCTAAGGC CGAGGGAGGT CAACGAGCTG TTGGAGAAGG CGGATAAATT GGACGTAGAC
GTGGGAATGG ACTTCTTTGG GACACGGCTG AGTGTTCCCA TCTACGTTGG CGACATGTCC
TTCGGCGCAT TGAGCGGAAA TCCCAATATC GCCATAGCAA AGGCTGTTAC GGAGTTCGGC
GCGGTGGCCG GGATAGGCGA GGGCGGGCTG CACCCCGAGG TGGCCAAGTA TAGGAACATA
GTGGTTCAAT GGGCCTCTGC CAGGTTTGGA ATGGGCCTAG ATCTGCTGAG GGCCGGCCTC
GCAGTTAATA TAAAGATTGG ACAGGGGGCT AAGCCGGGCA TAGGCGGCCA CTTGCCCGGC
AGAAAGGTGG TGGACATAAT AGCGCAACTC CGGAAGATAC CTAAGGGTAG CGATGCGCTT
TCCCCCGCAC CACACCACGA CATCTACTCA ATCGAAGACC TGGCGCAGAG AGTTAAAGCA
CTTAGAGACA TAAGCAAGAA GCCAGTATTG GTCAAAGTCG CGGCGGTGAA CAAGATAATG
TATGTGGCAG TGGGCGTGGC TAGGTCGACC GCGGAGGGCA TCATCATAGA CGGCGCAGGC
GCGGGGACAG GCGCCACGCC CCTCGCGATT AGAAACCACC TAGGCATACC CATCGACTAC
GCCATACCCG TCGTCCACGA GTGGCTTAGG AAAAACGGCG TGAGAGACAA CTTCTTAGTC
ATAGGCGGCG GCATGTTGTT CAGCGCAGAG GACGTGGCAA AATTGATCGC GCTTGGCGCA
GACATGGCGA ACATAGGCAC TGCCGCGCTC CTCTCCTTCG GCTGTATAAT GTGCCACGCC
TGTCACACCG GCGGGTGCCC CACGGCGTTG ACAAACCTAA TAGGGTATGG AAAAGAGCTG
GACATAGAGT GGGCCGCGGG CAATTTAAAG AACTACCTCA AGGCGCTGGA GGCGGGGCTT
AAGGCCATTG TATACGCCTT GGGCTTCAGC TCTGTGAGAG AGCTGGTGGG CCGCAAAGAC
CTCCTCAAGA TCGACTACGT CGACGAAGAG GTGGCCTCAA CCATCGGCGT TGAGCTCGGC
ACCCCTGGAG GAGTGGCCTT CTACGGCAAA TACGAGCCCG TGGTGTCTCA GGAGGTCTAC
GAGCGGGGAG AGCCGCCGAT AATAGGAATG GGCGGAGTAG TGCCCGGCTA TACCTACCCC
GCGAGGCGGC CTCTCGACCT GTTGCGCATT GAGGCGGTGC AGGTTACGCG CCCCTCTGTG
GACCCCTACA GAGAGCCGGT GTCCATAGAG GTCAACATTG GGCGTTTTAG GGCTGACACG
CCTGTGGGAG TGGCGGCGGA GGTAGACGAG GCGCTTGTGG AAGTGGGGAA GGGCCTGGGC
GCCTTCATAT ACGGCAACTG CGAAGACGAG CTTTGCGTAA ACAACTACGA CTGGGTCGCC
GTGCCGCCTA GTGGCGCCAC ACTGGCGAAC GGCGTCGCCG AGCTGGGGCG GGAGATCATA
GTGGTAGACG AAAGGCTTGG AGGCGACATG TGGCTTGAGG AGTATATACC GAGGCTAGAC
GTGGAGTTGA AAAAGAGGAG GGTTAGGGAC AGGGTGGTGG TTGTCGCAGT GGGGGAGTTC
TACGATGGCG CTGACGTGTA TAAACTCGCC GCTCTCGGCG CCGATGTGAT AGTACCGCTG
GGGATATTTA CGTATATACA CAGGCGCTTT AAGGACTTGC CCATGTGGAA AAGAGCTGAG
AAATACGAGA ACGCCATTTT GTCCATTGAA AAAGAGCTGA AGCTCGCCAT GGGCGCAGGT
GGTGTGACAA ACTATCAACA CATGGTGGGC AACAGGGACT TGGTGAGGTC ACTGGACGGC
GCGGTGGCAA AGAGGCTAGG CGTAGAGGTG GCAGGTAGGT AG
|
|---|
| Protein sequence | MISKLVVVKS YIPPARHRVP EFWDEEKINY VRASSQSGLP PYALSEPRRV GRLLDRISFK
DLRPREVNEL LEKADKLDVD VGMDFFGTRL SVPIYVGDMS FGALSGNPNI AIAKAVTEFG
AVAGIGEGGL HPEVAKYRNI VVQWASARFG MGLDLLRAGL AVNIKIGQGA KPGIGGHLPG
RKVVDIIAQL RKIPKGSDAL SPAPHHDIYS IEDLAQRVKA LRDISKKPVL VKVAAVNKIM
YVAVGVARST AEGIIIDGAG AGTGATPLAI RNHLGIPIDY AIPVVHEWLR KNGVRDNFLV
IGGGMLFSAE DVAKLIALGA DMANIGTAAL LSFGCIMCHA CHTGGCPTAL TNLIGYGKEL
DIEWAAGNLK NYLKALEAGL KAIVYALGFS SVRELVGRKD LLKIDYVDEE VASTIGVELG
TPGGVAFYGK YEPVVSQEVY ERGEPPIIGM GGVVPGYTYP ARRPLDLLRI EAVQVTRPSV
DPYREPVSIE VNIGRFRADT PVGVAAEVDE ALVEVGKGLG AFIYGNCEDE LCVNNYDWVA
VPPSGATLAN GVAELGREII VVDERLGGDM WLEEYIPRLD VELKKRRVRD RVVVVAVGEF
YDGADVYKLA ALGADVIVPL GIFTYIHRRF KDLPMWKRAE KYENAILSIE KELKLAMGAG
GVTNYQHMVG NRDLVRSLDG AVAKRLGVEV AGR
|
|---|
| |