| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1595 |
|---|
| Symbol | |
|---|
| ID | 4908736 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1481191 |
|---|
| End bp | 1482537 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640125343 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_001056479 |
|---|
| Protein GI | 126460201 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR02146] homocitrate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGTTCT CAGAGGAGTG GCGCGTTAGA ATTGCCAAGG CTCTCTCGGA CATCGGAGTC
GCCATGGTGG AGGTGGGAGA CCCAAACGTG GCCCCCGACA TAAAGTCGGC CATTAAGAAG
ATTGTGGCCT TGAAGAAGGA TGGGGAAATC GCCAGCGAAA TCGTCGTCCA CAGCCGCGCC
GTTAGGCAGG ACATTGAAAA CGCGGCGTCG CTTGAGCCGG ATAGAATAGC CGTCTTCTAC
GGCGTAAGCG ACATCCACCT GAGGCATAAG CACAGGAAGA GCAGAGAGGA GGCGCTCCAA
GTAATCGCCG AGATGGTGTC CATGGCCAAG TCCCACGGCG TGAAGGTGCG CTTCACGGCG
GAGGACGCCT CCCGCGCCGA CTTGGACTAC TTAATCCAGG TGGTCAAGAC AGCCCGCGAC
GCTGGAGCCG ACAGGGTAAG CATAGCAGAC ACAGTGGGGG TCTTTACCCC AGACAGGGCG
AGGGAGGTCT TCTCAAAGGT AAAGGCCGCT GTGCCAGACG TGGGGCTGGA CATACACGCC
CACAACGACT TCGGCATGGC AGTGGCCAAC AGCCTGGCGG CGGTGGAGGG GGGCGCAGAC
GTGGTACATA CTACCGTAAA CGGCCTGGGC GAGAGGGCGG GCATAACCCC CCTGCAGGCC
TTCGCCGCCG CCTACTACTA CCACAAGGGG GCCAAGCTGG TGAAGCTGGA GAAGCTACCA
GAGATAACGG CCATGGTGGA GGTGGCCAGC GGCATCACGG TAATGCCCAC CTTCCCCATC
GTGGGCGAAA ACGTCTTCAC CCACAAGGCC GGGGTGCACC AAGCCGGCGT CTTGGCCAAC
CCCGAGACAT ATGAGCCAAT ACCCCCCGAG GTGGTGGGCC GCACCAGGGA CTTCTCCCTC
GACAAGTACA GCGGGCGGAA GGCCATACAG CACAGGCTTG AGAGAATGGG GATATCAGTG
CCCCCCGAGG TGTTAGACAA GGTGGTGGAG GAGGTCAAGC GGACAAACGC CAGGCGGCTT
AGAGACGAGG ACCTCTTAGA AATCCTGGAG AAAGTGACAA ACGCGGTTTA TAAAGCCAGG
GTGAACAAGC ACATAGAGGC CTACGTGTGG CTTAAGGTGG CTAACAACGT CTACACAACC
TCAGTGGCCA GGAGAGTGGC CGCCATAAGA AACGTGGTGG CGGTCTCGGA GGTGACTGGC
GAGTACGACA TAGTGGCCAA AGTCGTCGCA GATAACACAG AGGAGCTAAA CGCCACGATA
GAGAGCATAA GAGAGGTGAA GGGCGTAGTA TCCACGCTCA CGAGCCTAGT CCTCAAGGAG
ATACCGGTCT CTAACGGCCG TGCCTAG
|
|---|
| Protein sequence | MVFSEEWRVR IAKALSDIGV AMVEVGDPNV APDIKSAIKK IVALKKDGEI ASEIVVHSRA
VRQDIENAAS LEPDRIAVFY GVSDIHLRHK HRKSREEALQ VIAEMVSMAK SHGVKVRFTA
EDASRADLDY LIQVVKTARD AGADRVSIAD TVGVFTPDRA REVFSKVKAA VPDVGLDIHA
HNDFGMAVAN SLAAVEGGAD VVHTTVNGLG ERAGITPLQA FAAAYYYHKG AKLVKLEKLP
EITAMVEVAS GITVMPTFPI VGENVFTHKA GVHQAGVLAN PETYEPIPPE VVGRTRDFSL
DKYSGRKAIQ HRLERMGISV PPEVLDKVVE EVKRTNARRL RDEDLLEILE KVTNAVYKAR
VNKHIEAYVW LKVANNVYTT SVARRVAAIR NVVAVSEVTG EYDIVAKVVA DNTEELNATI
ESIREVKGVV STLTSLVLKE IPVSNGRA
|
|---|
| |