Gene Pcal_1583 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1583 
Symbolrpl3p 
ID4909593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1472297 
End bp1473313 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content60% 
IMG OID640125331 
Product50S ribosomal protein L3P 
Protein accessionYP_001056467 
Protein GI126460189 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03626] archaeal ribosomal protein L3 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTCTTA AGATCAATAG GCCGCGTAGA GGCTCGATGG GAGTCTATCC GAGGAAGCGC 
GCGGCGGATA TTGTGCCTAG GGTGCGCACG TGGCCTGAGG TCAACCTGGG GAAGCCGACG
CTCTTGGGCT TTGCCGCGTA TAAGGCGGGG ATGCTCCACG CCGTTGTTGT AGACGACAGG
CCCACTAGCC CGCTTTATGG GAAAGAGGTG GTGAAGGCTG TCACAGTCCT CGACGCGCCT
CCTCTTTACG TGGCCGCGGT GAGGCTTTAC ACCCTGGACC CAACCAACGG CTACAAGGTG
GCGGTGGGGG AGGCTTGGGT CTCTGAGCCA CCGGCCGACT TGAGGAGAGT TCTCACTTTG
CCGGAGAAGT TTGACACTGA GAAGCAGTTG AAGGCGTTGG AGGAGTACAG AGACGTGGCT
GTCGACGTGA GAGTCCTCGT GGCTACTCAG CCCAGGCTCT CCGGCATTGG GAAAAAGACG
CCCGAGGTCT TGGAAATCCC CGTGGGCGGA GTGCCCAGCA TAGACGAGAG GATTAACTTC
GCCATATCGC TCCTGGGGAA GACCGTGTCG CCGAAGGACG TCTTTACGCC TGGCCAGCTG
GTCGACGTGA TTGCGGTCAC TAAGGGCAAG GGCTACCAGG GCGTAGTGAA GAGGTTCGGC
GTCACTATCC TCCCGAGGTG GCACAAGCAC AGGAAGGGCC ACAGGCGGAC GGGCACCATA
GGCCCCCAGG CGCCGGCGCT TATGTTCACT CAGCCCAGGC CGGGCCAGAT GGGCTTCCAC
CAGCGCACTG AGTACAACAA GAGGATTCTA AAGATAGGGG ACAACGGCGC CGAGATTACA
CCCAAGTCTG GCTTTCCGCA CTACGGCGTT ATAAAGGGGC CGTACATCCT TCTGCAGGGC
AGCGTGCCTG GGGCTAGGAA GAGGCTTGTC GTGCTTAGAT ACCCAGTTAG ACCGCCTAAG
AAGGCGCCGC CAGCCGCAGA GCCGCAGGTG GTTTGGGTTA GTTCTCAAAG TATTTAA
 
Protein sequence
MGLKINRPRR GSMGVYPRKR AADIVPRVRT WPEVNLGKPT LLGFAAYKAG MLHAVVVDDR 
PTSPLYGKEV VKAVTVLDAP PLYVAAVRLY TLDPTNGYKV AVGEAWVSEP PADLRRVLTL
PEKFDTEKQL KALEEYRDVA VDVRVLVATQ PRLSGIGKKT PEVLEIPVGG VPSIDERINF
AISLLGKTVS PKDVFTPGQL VDVIAVTKGK GYQGVVKRFG VTILPRWHKH RKGHRRTGTI
GPQAPALMFT QPRPGQMGFH QRTEYNKRIL KIGDNGAEIT PKSGFPHYGV IKGPYILLQG
SVPGARKRLV VLRYPVRPPK KAPPAAEPQV VWVSSQSI