Gene Pcal_1563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1563 
Symbol 
ID4909666 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1454698 
End bp1455090 
Gene Length393 bp 
Protein Length130 aa 
Translation table11 
GC content48% 
IMG OID640125311 
ProductCopG family transcriptional regulator 
Protein accessionYP_001056447 
Protein GI126460169 
COG category[K] Transcription 
COG ID[COG0864] Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain 
TIGRFAM ID[TIGR02793] nickel-responsive transcriptional regulator NikR 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTGAAAA GGATCTCTAT AACAATCGAC GAAGATCTCT ATAACCAGCT CAATAGAGCA 
ATGGTGAAGT TAGGCGAGAG CAATAGGTCT AGGTTTTTGG CGAACTTGGT GAGAGAGGCC 
TTGAAAGAGT TGGGACAAGG CGTTAGTAAC TTCGCCTTAG TGATAGTGGT ATATGACCAC 
AGAGTGGGAG AGGTGGATAA GACGCTTACG GAAATACAGC ACGAGTATAG AGACATAATC 
AGGGTGACAA CCCATATACA CTTGGACGAG AGGCACTGCG CAGAGGTTCT ACACGTGCTC 
GGCGACGCGA GTAGGGTGGA GGAGCTCGTC AGATCTATAA GTCTCTTAAG AAGGGGGCTG 
AAGTACGTAA GAGTAGTGCC AGTTGCCTAT TGA
 
Protein sequence
MVKRISITID EDLYNQLNRA MVKLGESNRS RFLANLVREA LKELGQGVSN FALVIVVYDH 
RVGEVDKTLT EIQHEYRDII RVTTHIHLDE RHCAEVLHVL GDASRVEELV RSISLLRRGL 
KYVRVVPVAY