Gene Pcal_1549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1549 
Symbol 
ID4908166 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1444178 
End bp1444828 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content60% 
IMG OID640125297 
ProductRNA 2'-phosphotransferase-like protein 
Protein accessionYP_001056433 
Protein GI126460155 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1859] RNA:NAD 2'-phosphotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACGTAT ACCGTTGTAG AGTGTGCGGA GAATACGTCG AGGAGCCTCG CCACTGCGGC 
GTAGACGCCG AGCTGGTCTT AGATGGGAAG ACCAGGGTGA AGATCTCCAA GTTGCTCTCC 
CTGGCGTTGC GCCACAGCCC CTCCGCCCTG GGGATGTCGC TAGACGAGGG AGGCTGGGCG 
CCCCTAGACG CCGTTGTGGC CGGGCTCAAG AAGCTCGGCC TCCCGGCATC GGCGGAGGCG 
GTGGAGGCTG TGGCGCAGTT GGACAAGAAG GGACGTTTTG AGCTCTCAAA CGGCCGCATT 
AGGGCGCGGT ACGGCCACAG CGTCTCGGTC AAGGTGGACT ACGAGGTGGA TACAGAGACG 
CGCCGACTAT ACCACGGCAC CACGCGCAGA AGCCTAGAGG GAATAATGAA GATGGGCATT 
TTGCCCATGA ACAGGCTGTA CGTCCACTTA GCCGTGGACT TCTACACGGC GTGTGAAACG 
GCGGCTAGGC GGCAAGACCC AGTGGTGCTG GAAGTAGACG CAGACTGCGC CAGAGCCGCT 
GGCCCAATAT ACAAGGCGTC TCCCGCAATC CGGCTCTCAA AGTATATACC GCCCACCTGC 
ATTACCGGCG TCTACCCATG CGAAAAATTT TATACAGCCA CCCAGGCATA G
 
Protein sequence
MDVYRCRVCG EYVEEPRHCG VDAELVLDGK TRVKISKLLS LALRHSPSAL GMSLDEGGWA 
PLDAVVAGLK KLGLPASAEA VEAVAQLDKK GRFELSNGRI RARYGHSVSV KVDYEVDTET 
RRLYHGTTRR SLEGIMKMGI LPMNRLYVHL AVDFYTACET AARRQDPVVL EVDADCARAA 
GPIYKASPAI RLSKYIPPTC ITGVYPCEKF YTATQA