Gene Pcal_1524 details

Gene Information

• Locus tag: Pcal_1524
• Symbol: cbiD
• ID: 4909340
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: -
• Start bp: 1423762
• End bp: 1424772
• Gene Length: 1011 bp
• Protein Length: 336 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 640125273
• Product: cobalt-precorrin-6A synthase
• Protein accession: YP_001056409
• Protein GI: 126460131
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG1903] Cobalamin biosynthesis protein CbiD
• TIGRFAM ID: [TIGR00312] cobalamin biosynthesis protein CbiD

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.00016517
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGATTCCAC TGATGCGTTT TGGGATAACC ACCGGCCTCG CGGCGGCTGC TGCGGCCAAG 
GCCGCCGCGC TGTTTGCGCT GGGGGAGCGG CCCAGAGCTG TGGTAGTGCC TACGCCCATT 
GGGCTAAGGA TTGAGGTGCC CGTGGAGAGG CTGTACGTAG AAGAGGGGAG GCACTGCGCC 
GAGGTAAAGA AGGTCTCTGG GGACAACCCC GACGTCTTGG ACGGGGCGAT AATCAAGGCG 
TGTGCGAGGC TGGGGGGCGA GGAGGTGGTA GTTAAGGGGG GCAGGGGGGT CGGCGTGGTC 
ACTAGGCCCG GTTTGCCGGT GCCCCCCGGA GAGCCCGCCA TAAACCCTGT GCCTAGGCGG 
ATGATTGAGG AGGCCTTTAG AGAGGTGGCG AAGGGCGGTG AAGTGGTGAT AGAGGTGCCC 
GGCGGGGAGG AGCTGGCCAA GTTAACCATG AACGAGAGGC TTGGCATCGT GGGCGGAGTG 
TCTATACTGG GCACCACTGG CATAGAGTAT CCAGTGAGCG CCGAGGGGTA TATTGAACAT 
GTAAAGGCCG AGCTGAAGGT GCTGAGGTCG TCTGGGGACA GAGTGGTGTT GGCGCAGGGG 
AGTGGAAGCG CCCAATATGC CAGGTCCGCC ATATGCGACT GTGTGGTCAA AATAGGGGAC 
TTAGTGGGAG AGGCCGTGGC GGCGGCTAGG GAGTTTGGCT TCTCTGAGAT CTACTTGGCC 
ACGATGCCGG GCAAGCTGGC TAAGATAGCT TGCGGTGCGT TGAACACCCA CAGCAAGTTG 
TGTAAATGCG GCGTAGAGTC CGTGCTTTAC TCGGCCGTGG CGGTGGGCGT AGATCCCGCA 
CTGCTTGGGG CACTAGTTAA GGCCTCGTCT GTGGAAGAGG CGCTGTATTA CTTGGGCCCA 
CACGCCAGGG CCGTGGTGGA ACACATGGCC GTTAGGGCTA AGCAGGCGTT GGGCAACGAC 
GTAGTAGTGG TGGTGTTCGC AAGGGGAGGG GAGCTGTTGG CCAAGGTATG A 

 

Protein sequence

MIPLMRFGIT TGLAAAAAAK AAALFALGER PRAVVVPTPI GLRIEVPVER LYVEEGRHCA 
EVKKVSGDNP DVLDGAIIKA CARLGGEEVV VKGGRGVGVV TRPGLPVPPG EPAINPVPRR 
MIEEAFREVA KGGEVVIEVP GGEELAKLTM NERLGIVGGV SILGTTGIEY PVSAEGYIEH 
VKAELKVLRS SGDRVVLAQG SGSAQYARSA ICDCVVKIGD LVGEAVAAAR EFGFSEIYLA 
TMPGKLAKIA CGALNTHSKL CKCGVESVLY SAVAVGVDPA LLGALVKASS VEEALYYLGP 
HARAVVEHMA VRAKQALGND VVVVVFARGG ELLAKV