Gene Pcal_1415 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1415 
Symbol 
ID4909229 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1325984 
End bp1326310 
Gene Length327 bp 
Protein Length108 aa 
Translation table11 
GC content60% 
IMG OID640125165 
ProductHxlR family transcriptional regulator 
Protein accessionYP_001056301 
Protein GI126460023 
COG category[K] Transcription 
COG ID[COG1733] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0193281 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACGCG CAGAAGTATA TGTGGAGTGC CCCGTTGTGA AGGCGTGGCG CATCTTAGGC 
CGGCCGTGGC GTCTTGTGAT AATTGAGCGA CTGCTCCACG GGCCTAGAAA ATTCAACGAC
CTCCTCTGGA GCATGCCGGG CATTAGCAGC AGGACGCTCT CCAAGGCGCT GAGGGAGTTG
GAGGAGTTGG GCATAGTGGC GAGGAAGACC GAGGGAAGGC ACGTCTACTA CTACTTGACA
GAGAAGGGGA GGGACTTGGC AGAGGTAGTG GAGGCGGTTA GGAAGTGGGC TGAGAAGTGG
ATGCCGCCCC GCGCCGCCGA GCAGTAG
 
Protein sequence
MRRAEVYVEC PVVKAWRILG RPWRLVIIER LLHGPRKFND LLWSMPGISS RTLSKALREL 
EELGIVARKT EGRHVYYYLT EKGRDLAEVV EAVRKWAEKW MPPRAAEQ