Gene Pcal_1404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1404 
Symbol 
ID4909168 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1317771 
End bp1318763 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content64% 
IMG OID640125154 
Producttransketolase, central region 
Protein accessionYP_001056290 
Protein GI126460012 
COG category[C] Energy production and conversion 
COG ID[COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0127505 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATAACC AGGGATTAGC CATGCCGGTC TTGAACATGG CCAAGGCCAT CAACGCCGCT 
CTCCACGAGG AGATGGAGAG GGACTCCTCC GTGGTGGTGC TGGGGGAGGA CGTGGGGAAG 
CGGGGCGGGG TCTTCTTAGT CACCGAGGGG CTGTACGAGA GGTTTGGCCC CAGTAGGGTA 
ATAGACACGC CCCTCAGCGA AGGGGGGATT ATAGGCTTTG CCATGGGCAT GGCCATGGCG 
GGGCTTAGGC CCGTGGCTGA GATACAGTTC GTGGACTTCA TCTGGCTCGG GGCAGACGAG 
CTCATCAACC ACCTCGCCAA GCTCAGATAC AGGTCGGGCG GCAACTACGC GGCCCCCGTG 
GTCGTGAGGA GCCCCTACGG CGCCGGCGTA AAGAGCGGGC TCTACCACAG CCAAAGCCCC 
GAGGCACACT TCGCCCACGC CCTGGGCCTC AAGGTGGTGG TGCCCTCCAC CCCCTACGAC 
GCCAAGGGCC TCCTCAAGTC GGCCATCAGG GGAAACGACC CCGTGGTTTT TCTAGAGCCA 
AAGCTCCTCT ACCGCGCGCC GAGGGAGGAG GTGCCCGAGG GGGACTACAC TGTCCCCTTG 
GGCAAGGCGA GGGTGGTGGC TGAGGGCGAC GACGTCACTG TGGTGACGTA CGGCTCAATG 
GTGCACAGGG CCGTGGAGGC GGCCAAGAGG GCCAGGGCCT CTGTGGAGGT GATAGACCTC 
AGAACGCTGG TCCCCTGGGA CGCGGAGGCC GTGTTGAAGA GCGTCAAGAA GACTGGGAGG 
GTCTTGATTG TGCACGAGGC GCCTAAGTTC GCCGGCTTTG GGGCAGAGAT CGCGGCCACG 
GTGGCCGAGA AGGCCATCGA CTACTTGAGA GTCCCCATTA GGAGAGTCGC CGGGCCCAAC 
GTCCACCAAA GCCCAGTGGC CCACGACGAG TTGTACATGC CCACCGTGGA GAAAATACTG 
GCCGCCGTCG AGGAGCTGAT GGGCTATGAT TGA
 
Protein sequence
MDNQGLAMPV LNMAKAINAA LHEEMERDSS VVVLGEDVGK RGGVFLVTEG LYERFGPSRV 
IDTPLSEGGI IGFAMGMAMA GLRPVAEIQF VDFIWLGADE LINHLAKLRY RSGGNYAAPV 
VVRSPYGAGV KSGLYHSQSP EAHFAHALGL KVVVPSTPYD AKGLLKSAIR GNDPVVFLEP 
KLLYRAPREE VPEGDYTVPL GKARVVAEGD DVTVVTYGSM VHRAVEAAKR ARASVEVIDL 
RTLVPWDAEA VLKSVKKTGR VLIVHEAPKF AGFGAEIAAT VAEKAIDYLR VPIRRVAGPN 
VHQSPVAHDE LYMPTVEKIL AAVEELMGYD