Gene Pcal_1366 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1366 
Symbol 
ID4909323 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1281306 
End bp1281656 
Gene Length351 bp 
Protein Length116 aa 
Translation table11 
GC content53% 
IMG OID640125117 
ProductPilT domain-containing protein 
Protein accessionYP_001056253 
Protein GI126459975 
COG category[R] General function prediction only 
COG ID[COG1848] Predicted nucleic acid-binding protein, contains PIN domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.435904 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATATACG TTGACGTCAA CGCCATCTAC TACTTCCTAA CGGCGCATCC GCAGTACGGG 
CCACGGGCAA AGAGACTGTT TCAACAGTAC ATCGGCGAGT TGGCGACCTC CGCCCTAACC
CCCTGGCTAA TGTTCGTACT CGCGAAAAAC CCAAAAGCCG CCGAAGCCGT CCTCCAGCTA
GCCGACATAC TGCCCCTCAC CGCCGACATT TACACCTTAG CCCTCCAGCT CGAAAAGCCA
CGCGACTTTG AAGACAGACT CCACTATGCC ACCATGAAGA AGCACGGGAT AAAGAAGATT
ATCAGCAACG ACAAAGACTT CGACGGCCTA GACGTAGAAA GGATCTTCTA A
 
Protein sequence
MIYVDVNAIY YFLTAHPQYG PRAKRLFQQY IGELATSALT PWLMFVLAKN PKAAEAVLQL 
ADILPLTADI YTLALQLEKP RDFEDRLHYA TMKKHGIKKI ISNDKDFDGL DVERIF