Gene Pcal_1330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1330 
Symbol 
ID4909448 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1246213 
End bp1248039 
Gene Length1827 bp 
Protein Length608 aa 
Translation table11 
GC content65% 
IMG OID640125081 
Producthypothetical protein 
Protein accessionYP_001056218 
Protein GI126459940 
COG category[R] General function prediction only 
COG ID[COG4880] Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.696713 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCCCAA CGGAAGGCGA AGGCAGCGTG TACTTTAAGT ACATCACATT TTTAACCCAC 
GGCCCCGAGG GAGCCATGTG GAAGCTGGCG GCGGCCGTGT TGGCCTTGGC GCTTCTCTTG
GCCTTGGCCG GCGGCTCGCC GCCTCAGCCC ACCGGCGCGG TAGAGGCGCT GCAGCTCCCA
GTGGTTAACC TCTCGGAGCT ACGCATGGTG ACCGGCTGGT CCGCCGTCCC CACCGCCCTC
TTCTACTACG CGGCCGCCGA CGCCGCGCCC GCCGTTGCGG CAAACGTGCA AGTGGCCGGC
GTGGACGAGG AGGACTACGT GAAATTCGAC GGGGAGAGGC TCTACGTTGC GTATAGGGGC
TACGTCTACG TGGTGGGGCC AGACTTGTCC GTGGAGAAGA GGTTGCCCTG CCCCTCCTCG
CTGGTCTGCT ACGTCTTTGC CTGGGGCAAC TCGGTGCTGG CCTACTCGCC CACTGAGGCG
GGCACAGTGC TCTACCTATA CGGCCCGTGG GGGAGGGCTG TCTACAACTA CTCCGGGTAC
CCCGTGTCCA CGAGGATGCG GGACGGCGTG GTGTACATTG TCGCAATGGG GGGCGTGGAG
GCGGAGATAA ACGGCGCCGC GGTCAAGGAG GCCCCCCTCC TCTCCCTCGG CGATCCCCCC
GCCACGCTCA TAGTGGCGGC TGTGGACATG AGGACAGGCC GCTTCAACGC CGCGGCCTAC
GTCTCCTCCG CGGTCAGCCA CGTCTACATG AGGGGAAACA GGCTGTACAT AGCCGCGCCC
CTGAGCCCCT ACGACCTCGC CTACGAGGCG ACCAAGGCCG TGTGGGAGAG ACTGCCCCCG
GAGATGAGGG CCGTGCTTGA CATGGAAAAC GTCTACACCT TCTACAAGAC CGTCAGAGGG
TTGCTGGAGT GGAGAGGCGG GGAGTACCTG TCCTACCTCA ACAAGGCCAA CACCACCACG
GCCACCAAGA TCTACGTCTT TGAGACAGAG GGCGTGGAGG CAAGGCTCAA GGCCGTCTTT
ATAGTCCCCG GCCGCGTCTT AGACCAATTC GCCGTGGAAG AGCTTGGGGA CAGGCTGGTG
GTGGCCACCA CCGCCGCCCC CGTCAAATTC GAGCTCCTAC GCCCACCCCC AGCCGACCCG
TTCCCCTCGG TGATTAAGAG AGAGGGGTTG CCCACACAAA TTCCGCCGCC CTCCCCACCG
CCCGTGCTCT ACGCCGCTGA GGGGGAGCCC ACAAACGCCG TCTACCTCTA CACGCCGGAT
GGGACATTGG TGGTCAAGGC GGAGGGGCTG GCCAGTGGCG AGAGGATATA CGCCGCGCGC
CTCGTGGGCT CCACTCTCTA CCTAGTCACC TTTAGGCAGG CCGACCCGCT GTTTGCGGTG
GACTTGTCCC GGGGAGAGCC ACGGGTGCTT GGCTACCTCA AGACGCCGGG CTTCTCGGAG
TACCTACACC CCGTGGCCCC CGGCAAGTTG TTGGGCGTCG GCGTCTACGG CGACGGCGTC
AAGATCGCGC TGTTCGACGT CTCCAACCCC GCGGCGCCCC GCGAGGTCTC CAACATCACC
GTGCCCCACT CCTATACACC CATCATATTC GACCACCACG CCTTCGCCTA CAGCCAGGGA
GTGGCCGTGG TGCCCATCCG CCTCCAGTGG CGGCAGTGCG CCGTTCTCGC CGTGGAAGTC
GGCGACGGCC TAACGGCGAG GACCTTGGAG GGCGTGTGCG CAGACAGGGC CTTCTTCAAA
GACGGGAGGA TCCACCTCGT GGGCAGAGGC CGCGTGTGGC TATACGACGC CACCTTCAAC
AAGGTTGGAG AAGTGGGGCT AAGTTAA
 
Protein sequence
MLPTEGEGSV YFKYITFLTH GPEGAMWKLA AAVLALALLL ALAGGSPPQP TGAVEALQLP 
VVNLSELRMV TGWSAVPTAL FYYAAADAAP AVAANVQVAG VDEEDYVKFD GERLYVAYRG
YVYVVGPDLS VEKRLPCPSS LVCYVFAWGN SVLAYSPTEA GTVLYLYGPW GRAVYNYSGY
PVSTRMRDGV VYIVAMGGVE AEINGAAVKE APLLSLGDPP ATLIVAAVDM RTGRFNAAAY
VSSAVSHVYM RGNRLYIAAP LSPYDLAYEA TKAVWERLPP EMRAVLDMEN VYTFYKTVRG
LLEWRGGEYL SYLNKANTTT ATKIYVFETE GVEARLKAVF IVPGRVLDQF AVEELGDRLV
VATTAAPVKF ELLRPPPADP FPSVIKREGL PTQIPPPSPP PVLYAAEGEP TNAVYLYTPD
GTLVVKAEGL ASGERIYAAR LVGSTLYLVT FRQADPLFAV DLSRGEPRVL GYLKTPGFSE
YLHPVAPGKL LGVGVYGDGV KIALFDVSNP AAPREVSNIT VPHSYTPIIF DHHAFAYSQG
VAVVPIRLQW RQCAVLAVEV GDGLTARTLE GVCADRAFFK DGRIHLVGRG RVWLYDATFN
KVGEVGLS