Gene Pcal_1316 details

Gene Information

• Locus tag: Pcal_1316
• ID: 4910253
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 1235017
• End bp: 1235661
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 640125069
• Product: TenA family transcription regulator
• Protein accession: YP_001056206
• Protein GI: 126459928
• COG category: [K] Transcription
• COG ID: [COG0819] Putative transcription activator

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.496095
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGGCGTTT CTGAGGTGCT TAGGGACAGG GCGTGGGGGG TCTGGGGGCG CATCTTGGAG 
CACCCCTTCG TGGTGGAGTT GTACGAGGGG AGGCTCCCCG TGGACAAGTT TAGGTACTAC 
CTGCTCCAGG ACTACTTCTA CCTCGTGAAC TTCGCTAAGG CCCTCTCCCT CGCGGCGGCT 
AGGGCCCCCT CTGTGGGGCT TATGAAGCTG GCGCTTGGCT TAGCCTACGG CACTGTGACT 
GGGGAAATGG CCAACTACGA GGGGCTGCTG AGGGAGGTGG GGCTCTCGGT GGAGGCGGCG 
GCCTCGACGG AGCCCAACGA GGTGAATAGG GCTTACATGA GCTTCCTCTT GGCCGCCTGC 
GCCTTGGAGG GGTTCTACGA GTGTATGGCG GCTGTCCTCC CCTGCTTCTG GACCTACTTA 
GACATCGCGG AACGGCACCG GGAGAGGCTT AGGGGGAACA AGGTGGACGT ATACGTGAGG 
TGGGCCTCTA CATACCTCTC CGAAGAGTAC CGGCGCCTCG TGGAGAGCCT CAAGTCGGCC 
CTAGACAAGG GGGGCAGAGG CGCCGACGAG CTTTGGCCGT ATTTCAAGGC GGCTGTGGAG 
TACGAGCTGG CGTTTTGGGA CGCCGCGTAC CGCGGGACTT CTTAA 

 

Protein sequence

MGVSEVLRDR AWGVWGRILE HPFVVELYEG RLPVDKFRYY LLQDYFYLVN FAKALSLAAA 
RAPSVGLMKL ALGLAYGTVT GEMANYEGLL REVGLSVEAA ASTEPNEVNR AYMSFLLAAC 
ALEGFYECMA AVLPCFWTYL DIAERHRERL RGNKVDVYVR WASTYLSEEY RRLVESLKSA 
LDKGGRGADE LWPYFKAAVE YELAFWDAAY RGTS