| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1275 |
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| Symbol | |
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| ID | 4909046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1183435 |
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| End bp | 1184319 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640125028 |
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| Product | CRISPR-associated Cas1 family protein |
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| Protein accession | YP_001056165 |
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| Protein GI | 126459887 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
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| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0357154 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATCG CAGTAGCTAG CTACGGGACG AGGATAAGGA CGAGGAAGGG CCTCCTCGTG
GTAGAGAGGG GCGGGGAGAG GCGGGAGTAC CCCCTGCACC AGGTAGACGA GGTGTTCATC
CTCACCGGGG GCGTCTCCAT AACCTCCAGA GCCCTGAGGG CCCTCCTCCG CGCCGGGGCA
GTGGTGGCGG TCTTCGACCA GCGGGGCGAG CCCCTGGGCA TCTTCATGAG GCCCGTGGGA
GACGCCACAG GCGAAAAGAG GAGGTGCCAA TACGCCGCGG CGGCAGGAGG GAGAGGCCTC
CAGTGGGCCA GAGAGTGGGT GTGGAAGAAG ATGAGGGGCC AGCTCCAAAA CGTCAAGGCG
TGGAGGAGGA GGCTGGCCCA CTACGGCGAC TACGTGGAAC AGATAGGCAG AGCCCTGGAG
GCGTTAAGAG CCGCCGCGTC GCCAGGCGAG GTGATGGAGG CCGAGGCCGC AGCCGCAGAG
GCATACTGGA GGGCCTACGG AGAGGTGACG GGCTTTCCAG GCCGCGACCA GGAGGGAGGA
GACCCGGTAA ACGCCGCGTT AAACTACGGC TACGGCGTGC TGAAGGCCCT CTGCTTCAAG
TCCATACTCC TCGCAGGTCT AGACCCCTAC GTTGGGTTCC TCCACGTGGA CAAGTCGGGG
AGGCCATCCC TAGTCCTCGA CTTCATGGAA CAGTGGCGCC CCCGGGTAGA CGCAGTGGTG
GCGAAGGTTG CCGGGGAGCT CGCCACGGAG AACGGCCTCC TAGACCACAA GTCCAGGCTG
AGAGTCGCCG CGGCGGTGCT GGAGGAGCTG GGCGCCGGGG CGAGGCCCGT TTCGGCGGAG
ATACACAGAG AGGCCAGGGC CCTCGCCAGG GCCATATGTA CATAG
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| Protein sequence | MQIAVASYGT RIRTRKGLLV VERGGERREY PLHQVDEVFI LTGGVSITSR ALRALLRAGA
VVAVFDQRGE PLGIFMRPVG DATGEKRRCQ YAAAAGGRGL QWAREWVWKK MRGQLQNVKA
WRRRLAHYGD YVEQIGRALE ALRAAASPGE VMEAEAAAAE AYWRAYGEVT GFPGRDQEGG
DPVNAALNYG YGVLKALCFK SILLAGLDPY VGFLHVDKSG RPSLVLDFME QWRPRVDAVV
AKVAGELATE NGLLDHKSRL RVAAAVLEEL GAGARPVSAE IHREARALAR AICT
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