Gene Pcal_1273 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1273 
Symbol 
ID4910251 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1181922 
End bp1182527 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content56% 
IMG OID640125026 
Producttranscriptional regulator, TrmB 
Protein accessionYP_001056163 
Protein GI126459885 
COG category 
COG ID 
TIGRFAM ID[TIGR01884] CRISPR locus-related DNA-binding protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.029654 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCTCG CGGTGACGGT GGGGTTTGAC GCAGATCTAG TGGTTAGGGC CTTGGCTAAT 
ATTAACGCTG ATGAGATATA CTTGGTGAGG GGGGTGACAG GCGGCGAGGG CGACGCCAAG 
TCTGAGGTCA CGGTGCGTAG TATTTTGAAG GCGTTGAGGA GGGGGGAGGA GCGGGTGGTT 
GATCTGCGGG ATTTGCCTAC TGGGCTGAGG CAGATGGCTC AGATTCCCTT TGACGCCGTG 
GCCTTGGCTG GGGGGCCGCG GGCTCTTGTG ATTGTAGCCT TCGTGGCCGC CGTGGTGAAG 
AGGGCGGGGC TCTTCTTGGT GCCTGAGTAT TCGCCGCATC CTGTCGACGT GTCTGGGTTT 
GTCTCACTTG TTGCTCTTGG CCGTGTTTCT AGGAAGAAGT TGGAGATCTT GGCTGCCTTA 
AATTCGGAGG CTGAGGTGGA GGAGGTGGCT AGGGCTGTGG GGATTGATGT TTCAACTGCG 
TATAGGCATC TTTCTTCTTT GGAGGAGGCT GGGTTGGTGA AGGGGGTGGG CGGTAGGAAG 
AAGAAGTATA GCGTAGATCC TCTTGTTGTT GCGCTTGCCT CTTTATTTCT GCAAAATTCT 
GGTTAA
 
Protein sequence
MRLAVTVGFD ADLVVRALAN INADEIYLVR GVTGGEGDAK SEVTVRSILK ALRRGEERVV 
DLRDLPTGLR QMAQIPFDAV ALAGGPRALV IVAFVAAVVK RAGLFLVPEY SPHPVDVSGF 
VSLVALGRVS RKKLEILAAL NSEAEVEEVA RAVGIDVSTA YRHLSSLEEA GLVKGVGGRK 
KKYSVDPLVV ALASLFLQNS G