| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1260 |
|---|
| Symbol | |
|---|
| ID | 4909370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1170400 |
|---|
| End bp | 1171269 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640125013 |
|---|
| Product | peptidase S1 and S6, chymotrypsin/Hap |
|---|
| Protein accession | YP_001056150 |
|---|
| Protein GI | 126459872 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.447417 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTTGA GCGGCCTCGT GGAGAGGGTG TCCAAGTCCG TGGTAGCTGT GGTGACTAGG
GGTGTGGAGC TCTGGGGAGA GGGGTTCGGC TCCGCCTTCT CCGTGGGCGA GGGGTTCTAC
GCCACTGCCT ACCACGTGGT GTCCACCGCC GGGGAGGTGG CCTTGGTGAC CCCCGAAGGG
GAGAGGGGCA CGGCCGAGGT GGCGGCCGTC GACCCAGAGG AGGACCTAGC CCTCCTCTAC
TCCTCCCTGG TAGCCCCTCC TCTGCCCTTG GGGAGCGCCT TGGAGCTTAA GGTGGGGCAG
GGGGTGGTGG CGGTGGGGTA CCCTCTGGCA CTGTTGGACA AGCCCACGGC CACGTTCGGT
ATTGTGAGCG CGGTTGGGAG AGCGCTGAAG GCTGGGGACA GGGTGTTCGA GTTCCTTATC
CAGACCGACG CGGCTATTAA CCCGGGCAAC TCGGGGGGGC CTCTTGTGGA CATGGGGGGC
AGGGCGGTGG GGGTGAACTC GGCCGTCATT GCGGGGGCGC AGGGCATAGG CTTCGCAGTC
CCCATAGACC TCGTGAAGAT TATGCTGGAG ATGTTGAAGC GGTTTGGGCG CTACGTGAGG
CCGAGGCTGG GGGTCTACGT GGCGGCGTTG AACAAGGCCC TCGCGGCGGC CTACGGCCTC
CCCATAGCCA GGGGCCTGCT CGTGGCTGGG GTCTACCCCG GCTCGCCTGC GGAGAGGTTG
GGCATAAGGC CCGGCGATGT CATCGTCAAG GTGGACGGCC GCGCTGTGTC CAACGTCTTT
GAGCTCAGGC TCTTCCTCGC CGAGGCCGTG GCTCAGGGCA GAGAGCCGGC CGTCACTGTG
TGGAGGGCGG GGCGGGAGGT GGAGCTATAG
|
|---|
| Protein sequence | MDLSGLVERV SKSVVAVVTR GVELWGEGFG SAFSVGEGFY ATAYHVVSTA GEVALVTPEG
ERGTAEVAAV DPEEDLALLY SSLVAPPLPL GSALELKVGQ GVVAVGYPLA LLDKPTATFG
IVSAVGRALK AGDRVFEFLI QTDAAINPGN SGGPLVDMGG RAVGVNSAVI AGAQGIGFAV
PIDLVKIMLE MLKRFGRYVR PRLGVYVAAL NKALAAAYGL PIARGLLVAG VYPGSPAERL
GIRPGDVIVK VDGRAVSNVF ELRLFLAEAV AQGREPAVTV WRAGREVEL
|
|---|
| |