| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1250 |
|---|
| Symbol | |
|---|
| ID | 4909614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1162772 |
|---|
| End bp | 1163668 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640125003 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001056140 |
|---|
| Protein GI | 126459862 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.858422 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTACG CCGTGGAGCT TGAGGAGAGA TTCGTCATAC GGGTAGAGAA GGGCGACGTG
GACTTCCACT TGACAGCCGC CGTCTACAAC TTCAAATGGT ACTACGACGG GGAGAGGCTT
GTCCTCGTGG AGGACAGAGA CGCGGCGCTC GTGGTCGAGG AGGAGGGGAC GTGGCTGAGA
GTGACGGGTT ATGGGGAGGT GGAAAAGGGT GAGGCGGCGG AGCTCGTGGC CAAGAGGCTC
GGCCTGGGCG AGGACTACTC CGACTTCTTC CGCCGGGCGG CGGGGGACCC CATTCTCAGA
GAGGCGCCGC GGATATTTGC AAAGTGGAGG CTCAGATCTG CCACGCCCTG GTACGCCTTC
CTAGTCGCAG TGCTACAGCA AAACGCCAGC TTCCTCCAGG GCTGGAGGGG GCTCTGCTGT
ATAATAAAGC GGTTTGGCAC GCCGATGAGG CTGGGGCAGA TGTACACCAT CGCCCCGCCG
ACCCCACGCG AGGTCCTCGA CCTGGGAGAC AAGCTGAGGA GTTGCCCCAT CGGATACCGC
GCCGCCACCA TAGCCGCCGT GGCCGAGACC TTTGCAAAAG GCGGAGACCC CTTCAAGGCG
AGAGGCGTAG GGCCCTACAC GAGGAGCCTC GTGGAGCTAC TCGCCCACCG GAGATACGAC
GCAGCCCCCG TAGACAGGTG GGTCAAGCGG CTCGTCCAAG AGGCCGTGGG CCAAGACGCA
GAGCAATACC TCCGAGAGAA GTTCGGCCAA TGGGCAGGCC TCGCAGTCTA CCTCTACACC
GTGGCCCTAG ACGCGGCCCC CCTACGGAAG GCCCTCGAAA GGCTGAAGAA AGGCCAAGTG
ACACCAATGG AAGAGGTCTC GCCAATGGGC ATGTGGAAGA CAGAGATGTG CCACTAA
|
|---|
| Protein sequence | MVYAVELEER FVIRVEKGDV DFHLTAAVYN FKWYYDGERL VLVEDRDAAL VVEEEGTWLR
VTGYGEVEKG EAAELVAKRL GLGEDYSDFF RRAAGDPILR EAPRIFAKWR LRSATPWYAF
LVAVLQQNAS FLQGWRGLCC IIKRFGTPMR LGQMYTIAPP TPREVLDLGD KLRSCPIGYR
AATIAAVAET FAKGGDPFKA RGVGPYTRSL VELLAHRRYD AAPVDRWVKR LVQEAVGQDA
EQYLREKFGQ WAGLAVYLYT VALDAAPLRK ALERLKKGQV TPMEEVSPMG MWKTEMCH
|
|---|
| |