| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1239 |
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| Symbol | |
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| ID | 4908729 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1152660 |
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| End bp | 1154156 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640124993 |
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| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
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| Protein accession | YP_001056130 |
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| Protein GI | 126459852 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.704875 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACTACA TCGAGGGGGG CTGGCCCTAC TCCAACCCCA AGGACTTGGA CTTCTTCAAG
GCCATGAAGG AGTACTCTCT CACTAGGGCG AGGCTCGCGG CGTTTGGAAG CACTAGGCGC
AAGGGGGTTA GGCCGAGGGA CGACGAGAGT TTAAACGCCA TAGTGAAGGC CGACGTCCCA
GTGGCGGTGA TCTTTGGGAA GAGCTGGACT CTCCACGTGG AGAAGGTGTT GGAGACCACG
TGGGAGGAGA ACTTGGCCAT GATAGCCGAG AGCGTGGAGT ACCTCAGAGA GCACGGCATG
GAGGTGATAT ACGACGCTGA GCACTTCTAC CAAGGCTACA TAGAGGACCC AGAGAGGGCC
CTTGAGTCTA TAGAGACTGC TTGGAGGGCG GGGGCCAGGG TGGTGGTGCT GGCAGACACC
AACGGGGGCA CTCCGCCCCA TGAGGTGTAC AGAATTACGG CGGAGGTGAA GAGGAGGTTC
CCAGCCATGG CGCTGGGGGC CCACATGCAC AACGACATCG GCTGCGCCGT GGCCAACACC
CTAATGGCCG TGGTGGCGGG GGCTAGGCAC GTGCAGGGGA CTATAAACGG GGTGGGGGAG
AGGACGGGGA ACGCGGACTT AACCGCCGTG TTGCCCACCC TGGAGCTGAA GATGGGCTTC
CGTGTGCTTA GAGACGAGCC GCCCCCCGTT AAGTTTGGAC GGCTGAGAGA GCTGTCGCGG
ATGGTGTACG AGGCGCTTGG CAGACAGCCG AACCCCTACC AGCCCTACGT GGGAGACTTC
GCCTTTGCCC ACAAGGGCGG AGTCCACGCA GACGCGGTTA TGAAGGTGCC GAGGGCCTAC
GAGCACATTG ACCCAGCGCT GGTGGGGAAT AGGCGCGTCG TCGTGGTGTC CGAGATGGCT
GGGGGCGCCA GCGTGGCGCT CAAGGCTGCG GAGGAGCTGG GCATCCCCCT CGACAAGCGC
CACCAGGCGG TTAGGAGGGC GCTTGAGGAG GTGAAGAGGC TTGAGAGAGA GGGCTACTCC
TTCGACGAGG CCCCAGCCTC GGCGCTTTTG ATACTGTTAA AACACCTCGG CCTTTACAAG
GAGCGGTTTA GGCTGACGGA GTGGCGGGTG GTGACTGGCC CCACCCCTGC CGCATTTGCC
GTGGTCAAGG TCAAGGTGGG CGGCAGAGAG ATGCTCGAGG CTGGGGAGGG CGTGGGCCCC
GTGCACGCCG TAGACGTGGC GCTGCGGAGG GCCTTCACGG CAGCTTTCCC AGAGCTTCTG
AGGGTCACCC TGCGCGACTA CCGCGTCGTC TTGCCCACCA CGGTGAAGAG CACGGAGAGC
GTCGTGAGAG TCACGGTGGA GTTCACAGAC GGCGAGCGCG TCTGGAGGAC AGTGGGCGTC
TCCAGCAACG TGGTAGACGC CTCCATAAAG GCGATAGTAG ACGCCTATGA CTTTGCGCTA
CAGCTTCAGT CTCTCAAAAA GGCGGCGGAG GTCCAAGGCG TCGGCCACCT GGCCTAG
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| Protein sequence | MDYIEGGWPY SNPKDLDFFK AMKEYSLTRA RLAAFGSTRR KGVRPRDDES LNAIVKADVP
VAVIFGKSWT LHVEKVLETT WEENLAMIAE SVEYLREHGM EVIYDAEHFY QGYIEDPERA
LESIETAWRA GARVVVLADT NGGTPPHEVY RITAEVKRRF PAMALGAHMH NDIGCAVANT
LMAVVAGARH VQGTINGVGE RTGNADLTAV LPTLELKMGF RVLRDEPPPV KFGRLRELSR
MVYEALGRQP NPYQPYVGDF AFAHKGGVHA DAVMKVPRAY EHIDPALVGN RRVVVVSEMA
GGASVALKAA EELGIPLDKR HQAVRRALEE VKRLEREGYS FDEAPASALL ILLKHLGLYK
ERFRLTEWRV VTGPTPAAFA VVKVKVGGRE MLEAGEGVGP VHAVDVALRR AFTAAFPELL
RVTLRDYRVV LPTTVKSTES VVRVTVEFTD GERVWRTVGV SSNVVDASIK AIVDAYDFAL
QLQSLKKAAE VQGVGHLA
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