Gene Pcal_1227 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1227 
Symbol 
ID4910038 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1141517 
End bp1142479 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content53% 
IMG OID640124981 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001056118 
Protein GI126459840 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.213688 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGGCGC TGGTCAAGGC CGAGGGTCTT ACGAAGTATT TCCCAGTGGG CGGACTGCTG 
AGGCCCAGGG GCTATGTGAA AGCCGTGGAC CACGTCGACT TGGAGATATA CGAGGGCGAG 
ACGCTGGGGC TCGTTGGAGA AACTGGGAGT GGGAAGACTA CGCTGGGGCG CCTAATTTTG 
AGGCTCATAG AGCCTACGTC GGGTAGAATA TACTTCGAGG GAGAGGATAT TACAAAGGCC 
TCTGGGGCTA AGCTGAGGGA GTTTAGGAAG AAGGCGCAGA TGATCTTCCA AGACCCCTAC 
ATGTCTCTAA ACCCCAGGAT GACTGTGTAC CAGACTCTGC TCGAGGTAAT AAAGGTGCAC 
AAACTGCCCA TCGACGATCC GGAGGAGTAC ATTGGCAAAA TGCTAGAGCT CGTGGGCCTT 
GAGAGAAGCC ACTTGCATAG GTATCCCCAC GAGTTTAGTG GAGGCCAGAG GCAGAGGATA 
GCCATATTAA GGGCCTTGTT GCTGAGGCCG AAGTTTTTGG TGTTAGATGA GCCGACCTCG 
GCGCTGGACG TGTCGGTACA GGCCCAGATA TTGAACATGT TGAAGGATTT GCAAAAGCAG 
ATGGGGTTGA CGTACCTCTT CATAAGCCAC GACATTGGGG CTGTGAGGTA TATGAGCGAT 
AGAATCACCG TGATGTACTT GGGGAAAGTC GTGGAGGTGG GCCCAGCTGA GGAGATTGTA 
AAAGAGCCAC TACACCCCTA CACTCAAGCC CTCATATCTG CCCTGCCCAT ACCGGATCCA 
AAGGTGGCTA GGAGTAGGAA GAAGATTTTG CTCACGGGCG AGCCGCCGAG CCCCATAAAT 
CCGCCGCCTG GATGTAGATT TCACCCACGT TGTCCATATG TGATAAAGGG CAAGTGCGAA 
AGAGAAGAGC CGCCCCTAGT GGAGGTGAAG AGGGGACACT ATGTGGCATG CCACTTGTAT 
TAG
 
Protein sequence
MRALVKAEGL TKYFPVGGLL RPRGYVKAVD HVDLEIYEGE TLGLVGETGS GKTTLGRLIL 
RLIEPTSGRI YFEGEDITKA SGAKLREFRK KAQMIFQDPY MSLNPRMTVY QTLLEVIKVH 
KLPIDDPEEY IGKMLELVGL ERSHLHRYPH EFSGGQRQRI AILRALLLRP KFLVLDEPTS 
ALDVSVQAQI LNMLKDLQKQ MGLTYLFISH DIGAVRYMSD RITVMYLGKV VEVGPAEEIV 
KEPLHPYTQA LISALPIPDP KVARSRKKIL LTGEPPSPIN PPPGCRFHPR CPYVIKGKCE 
REEPPLVEVK RGHYVACHLY