Gene Pcal_1193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1193 
Symbol 
ID4909916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1108529 
End bp1109263 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content65% 
IMG OID640124947 
Producthypothetical protein 
Protein accessionYP_001056084 
Protein GI126459806 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTACTGCT TCTGCGGGCG GCCGGCTAGG GAGTCCGGCT TCTGCGAGTA CCACGACCCC 
CAGTGCGTGA GAGACCCCAA GTGCAGAGCC AAGCTGGTCT TCACACCCAG CTGCGAGAGG 
TGCCACCTGC CGGGGGGCGA GGCCTCGGGG ATTGCGCCGA GGCTCAGGGA GACACACATC 
CACGGGCCCC TTGTGGTAGA GACCGTGGTG GGGGACGTGG AGCTGGAGGG GGCGAGGGGG 
GTGGACGTGT ACATATACAG CGTGAGGGGG GTCGTGAACA TGAAGGGGGC CAAGTTTCGC 
CATGTCTACG TGGACGGAGT GGTCGGCGGC GTGGAGATGG CCGGCGCCAG AGTGGAAAGC 
GCCGTGGTGG TCGACGTGCT GGGGGGCGTG AACTTGGACG GAGTGCGCGC TGGGGGCCAC 
GTATACGTGG GCTGGGCCTC CTCCCTAAGC GCCAGGGGGG CCAGCGTGGC GGGGGAGCTC 
GTCGTAGAGA GGGCCAAGGG CGGCGTTGCC GCAGCGGGGG CCAGGGCCTA TTCGCTCACA 
GTATACAGGG CGGGCGGAGT CGTCGATCTG TCAAACGCAG TTGTAGAAGG CGACATCTTC 
ATCGTAGAGG TGGTGGGGGA CAGGCTCGAC CTCTCAGGCG CGGAGGTGGG GGGCAGAGTG 
TACATAATGG AGTCGAGGTT CGGGGGAGTG AGAGTAGACA AGGCGGACCT CTTTAAGAGG 
GTTGTAGTTC TGTAG
 
Protein sequence
MYCFCGRPAR ESGFCEYHDP QCVRDPKCRA KLVFTPSCER CHLPGGEASG IAPRLRETHI 
HGPLVVETVV GDVELEGARG VDVYIYSVRG VVNMKGAKFR HVYVDGVVGG VEMAGARVES 
AVVVDVLGGV NLDGVRAGGH VYVGWASSLS ARGASVAGEL VVERAKGGVA AAGARAYSLT 
VYRAGGVVDL SNAVVEGDIF IVEVVGDRLD LSGAEVGGRV YIMESRFGGV RVDKADLFKR 
VVVL