Gene Pcal_1172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1172 
Symbol 
ID4909293 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1092437 
End bp1093147 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content59% 
IMG OID640124926 
Producthypothetical protein 
Protein accessionYP_001056063 
Protein GI126459785 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2230] Cyclopropane fatty acid synthase and related methyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGGACC TACCTCTTGT AAACTTATAT AGTACAGACA TTGTGGGGTT CATGTACGAC 
GTGCCCTTCG TGGCGACGCC CGAGGTGGTG GTCAGGAGGA TGCTCCAGCT CGCCCGGGTC
CAGCCCGGCG AGATCCTCTA CGACCTGGGG TCTGGGGACG GGAGAATTGT CATAATGGCG
GCGAAGGAGT TCGGCGCGCG GGCCTTCGGC GTGGAGATTA GGAAGGACCT CTACGAGCAG
TCAATGGCCA GGATCAAGGA CTTGGGCTTG GCCGACAGAG CCACTATAAT AAACGCGAGC
TTCTTCGATG TAGATTTGTC AAACGCAGAT GTGGTCACCA TGTACCTCCT CACCAGCGTA
AACGAGAGGC TCAAGCCGAA GTTGGAGAGG GAGCTCCGGC CCGCCACGCG GGTGGTCTCC
CACGACTTCG AGGTGCCGGG CTGGCGGCCC GTGGTAGTGG AGGAGATATA CGAGGAGTGG
AGGAGCCACA AGCTGTTCTT GTACAAGGTG CCGGGGAAGG AGGTGCCCAT GCCCGGCAAA
GCCGTGGCCC TGGAGGACAA GTGGCTTAGG CAGGTGGCCG AGCTAGTGGA CGGGTCCAGG
TCGCTTGAGG AAATCGCGGC AAAGCTCGGG GTGACGATTA GGCGCGTCAG AGAGGCCGTG
GAGGAGTTGA GGAAGCTCGG CGTTGTTGAT GAGGTGAAGA TAATTAAATG A
 
Protein sequence
MWDLPLVNLY STDIVGFMYD VPFVATPEVV VRRMLQLARV QPGEILYDLG SGDGRIVIMA 
AKEFGARAFG VEIRKDLYEQ SMARIKDLGL ADRATIINAS FFDVDLSNAD VVTMYLLTSV
NERLKPKLER ELRPATRVVS HDFEVPGWRP VVVEEIYEEW RSHKLFLYKV PGKEVPMPGK
AVALEDKWLR QVAELVDGSR SLEEIAAKLG VTIRRVREAV EELRKLGVVD EVKIIK