| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1171 |
|---|
| Symbol | |
|---|
| ID | 4909189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1091553 |
|---|
| End bp | 1092440 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640124925 |
|---|
| Product | putative deoxyhypusine synthase |
|---|
| Protein accession | YP_001056062 |
|---|
| Protein GI | 126459784 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1899] Deoxyhypusine synthase |
|---|
| TIGRFAM ID | [TIGR00321] deoxyhypusine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGAAG TCGTCGAGTT GTACAAGAGG ATAGGGGGTT TTCAGGCGCT ACACGTCGCC
CAAGCCTACG AAGTTCTAAA GGAGGCGCTG GGCGAGGCAG ACGTGCGTTT TTTCTCCTTC
ACTGGCAACC TAGTGGCCAC GGGGCTTAGG GAGATTATAG CCGAGGCTCT GAGGGAGAGA
CTCTTCAACG TGGTCGTCAC TACCGCCGGC GCCTTAGACC ACGACATAGC CAAGGCCATG
GGGGCCTCCT ACAGGCCCGG CTCCTTTGAC TTAGACGACT ACGAACTGGC CGAGAAGGGG
CTTCACAGGC TTGGAAACGT GGTGATTAGC AGAGAGGAGT ACGGCCCGTA CGTGGAGAAG
TTTGTGCTTC AGAGGTGTGA AAGGCTGTGG GGGAGGTCGC TGGCCACCTA CGAGCTGGCC
GAGGAGTTTG GGAGAGATCT CCCTGAGGAC TCCATACTCG GCGCGGCGGC CAGGGCGGGG
GTAAAGGTCT TTGTCCCCGG CATCGTCGAC GGCGCCGTGG GGACCGCCTT GCTCACTTGC
AACGACTTGG CGAGGGTCAG GAGAGGCGGG GCGAGGCTTG TGGTAGACGT GTTAAAGGAC
GAGGAGGCCC TCAGGGAGAT TGTGCACGGG GGCAAGAGGC TGGCCGCGCT CATCGTCGGC
GGGGGCATCA GTAAACACCA CGTAATTTGG TGGGCACAGT TCAAGGGCGG CCTCGACTAC
GTTGTTTACA TCTCCACGGC TGTTGAATAC GACGGCTCTC TAAGCGGCGC CCGGCCGAGG
GAGGCGGTGA GCTGGGGGAA GGTCAAGCCC ACGGCTAAGA GCGTGTACGT CTACGCCGAT
GCGACCCTCG TACTGCCCAT ACTTCTAAAG GCGCTATGTG GCAAATAG
|
|---|
| Protein sequence | MREVVELYKR IGGFQALHVA QAYEVLKEAL GEADVRFFSF TGNLVATGLR EIIAEALRER
LFNVVVTTAG ALDHDIAKAM GASYRPGSFD LDDYELAEKG LHRLGNVVIS REEYGPYVEK
FVLQRCERLW GRSLATYELA EEFGRDLPED SILGAAARAG VKVFVPGIVD GAVGTALLTC
NDLARVRRGG ARLVVDVLKD EEALREIVHG GKRLAALIVG GGISKHHVIW WAQFKGGLDY
VVYISTAVEY DGSLSGARPR EAVSWGKVKP TAKSVYVYAD ATLVLPILLK ALCGK
|
|---|
| |