| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1148 |
|---|
| Symbol | |
|---|
| ID | 4909433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1072983 |
|---|
| End bp | 1073795 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640124902 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001056039 |
|---|
| Protein GI | 126459761 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.614659 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTACA AGGTCATAGT AGGACTCGCG CTGGGGCTAG TCATCGGAGT TGTCTTAGGC
GCCTTGGCCA ATTGGGGCGC TCAGCAACAA CAAGCCGCCC CGCCCACATG CCCCACGTCT
GTGGACGCAA TAAAGAAGAG GGGGAAGCTC ATCCTTGGCA CTTCGGCGGA TTGGCCCCCC
TACGAGTACG TCGAGGGGGG ACAGATCGTG GGTATAGACG TTGAAATTGC CAAAAGGATC
GCCAACGCGC TTGGGGTCCA GCTTGAGATA CGCGACATTA AGTTTTCAGG GCTGATAGAG
GCGGTTAAAA GAGGCGAAGT CGACCTCGTG TTGGCTGACA TGGCCATAAC CCCCGAGAGG
GAGGCACAGG TGCTTTTCTC AATTCCGTAC CAAGTGGACA GCTCCGTGGT TATTACCCTG
GGGTCTGGGA AGGTCGCTAG CGTAGACGAC TTGAGGGGCA AGGCAATAGG CGTGCAGATA
GGCACGGTGC AAGAGGATTG GGCTGTGAAA ACTCTCGGCA ACTCTTCAAA GATTGTGAGA
TATGACAAGG TTTACCCCTA CATGGTTGAG GCGTTGAAGA AGGGCGACTT AGACGCCATT
GTGGTGGGCG GCGTGGTTGG GCGGGCTCTT GTCGCCAAGT TCCCAGAGCT GAGGCAGGCC
TTCTCCGTGG GCGTGCGCTA CAGCGCGGCC GCCATGCCCC TCTGCGCACA CGACCTAAAG
CTCGTGGTGG ACAAGGTGAT TTACGACATG CTTCAAAGCG GGGAGATGGA GAAGCTGATA
AATAGCTGGG TGGAGAAATG GCTGTATGGA TAG
|
|---|
| Protein sequence | MDYKVIVGLA LGLVIGVVLG ALANWGAQQQ QAAPPTCPTS VDAIKKRGKL ILGTSADWPP
YEYVEGGQIV GIDVEIAKRI ANALGVQLEI RDIKFSGLIE AVKRGEVDLV LADMAITPER
EAQVLFSIPY QVDSSVVITL GSGKVASVDD LRGKAIGVQI GTVQEDWAVK TLGNSSKIVR
YDKVYPYMVE ALKKGDLDAI VVGGVVGRAL VAKFPELRQA FSVGVRYSAA AMPLCAHDLK
LVVDKVIYDM LQSGEMEKLI NSWVEKWLYG
|
|---|
| |