Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_1148 |
Symbol | |
ID | 4909433 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 1072983 |
End bp | 1073795 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640124902 |
Product | extracellular solute-binding protein |
Protein accession | YP_001056039 |
Protein GI | 126459761 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.614659 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTACA AGGTCATAGT AGGACTCGCG CTGGGGCTAG TCATCGGAGT TGTCTTAGGC GCCTTGGCCA ATTGGGGCGC TCAGCAACAA CAAGCCGCCC CGCCCACATG CCCCACGTCT GTGGACGCAA TAAAGAAGAG GGGGAAGCTC ATCCTTGGCA CTTCGGCGGA TTGGCCCCCC TACGAGTACG TCGAGGGGGG ACAGATCGTG GGTATAGACG TTGAAATTGC CAAAAGGATC GCCAACGCGC TTGGGGTCCA GCTTGAGATA CGCGACATTA AGTTTTCAGG GCTGATAGAG GCGGTTAAAA GAGGCGAAGT CGACCTCGTG TTGGCTGACA TGGCCATAAC CCCCGAGAGG GAGGCACAGG TGCTTTTCTC AATTCCGTAC CAAGTGGACA GCTCCGTGGT TATTACCCTG GGGTCTGGGA AGGTCGCTAG CGTAGACGAC TTGAGGGGCA AGGCAATAGG CGTGCAGATA GGCACGGTGC AAGAGGATTG GGCTGTGAAA ACTCTCGGCA ACTCTTCAAA GATTGTGAGA TATGACAAGG TTTACCCCTA CATGGTTGAG GCGTTGAAGA AGGGCGACTT AGACGCCATT GTGGTGGGCG GCGTGGTTGG GCGGGCTCTT GTCGCCAAGT TCCCAGAGCT GAGGCAGGCC TTCTCCGTGG GCGTGCGCTA CAGCGCGGCC GCCATGCCCC TCTGCGCACA CGACCTAAAG CTCGTGGTGG ACAAGGTGAT TTACGACATG CTTCAAAGCG GGGAGATGGA GAAGCTGATA AATAGCTGGG TGGAGAAATG GCTGTATGGA TAG
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Protein sequence | MDYKVIVGLA LGLVIGVVLG ALANWGAQQQ QAAPPTCPTS VDAIKKRGKL ILGTSADWPP YEYVEGGQIV GIDVEIAKRI ANALGVQLEI RDIKFSGLIE AVKRGEVDLV LADMAITPER EAQVLFSIPY QVDSSVVITL GSGKVASVDD LRGKAIGVQI GTVQEDWAVK TLGNSSKIVR YDKVYPYMVE ALKKGDLDAI VVGGVVGRAL VAKFPELRQA FSVGVRYSAA AMPLCAHDLK LVVDKVIYDM LQSGEMEKLI NSWVEKWLYG
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