Gene Pcal_1098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1098 
Symbol 
ID4909959 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1031267 
End bp1031872 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content59% 
IMG OID640124852 
Productisochorismatase hydrolase 
Protein accessionYP_001055989 
Protein GI126459711 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1335] Amidases related to nicotinamidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTCCGG CCACTGTCTC TGTGCCAAGG GTGACGGTGG TGGACAAGGT GGTCCTCCCG 
GCGGATAAGA CCGCGGTGGT TGTAGTAGAT ATGCAGAACG ACTTTGCCCA CCCCAACGGA 
AGGCTGTATT CCCCCTCCTC GCGGGAGATT ATCCCGAGGA TAGCCAAGCT CTTGGCCAAG 
GCCAGGGAGA AGAAGGTGAG GGTCATATAC ACCCAGGACA CTCACTATCC CGACGACCCG 
GTGGAGTTTC CCATATGGGG GCCGCATGTG GTTAAGGGTA GCTGGGGATG GCAGATAGTG 
GACGAGCTCA AGCCGGCCGA GGGCGACATC GTGGTCGAGA AGATGCGCTA CGATGCCTTC 
TTTGGCACGC CGCTTGATCA CATACTCCGT ATGTACGGCG TGAGACACCT AGTGGTGACG 
GGCACCGTGG CCAACATATG CGTCCTCCAC ACGGTGGCCA GCGCCAGGCT TAGGCTCTAC 
GACGTGGTTG TCCCCATAGA CGCAATAGCG GCACTCAACG AGTTCGACTA CGCCGCCGCG 
CTGCGGCAGA TGGACTTCCT CTACAAAGTC ACGTTGACTA CGACGGAGGG GGTGGAGTTC 
CAGTGA
 
Protein sequence
MLPATVSVPR VTVVDKVVLP ADKTAVVVVD MQNDFAHPNG RLYSPSSREI IPRIAKLLAK 
AREKKVRVIY TQDTHYPDDP VEFPIWGPHV VKGSWGWQIV DELKPAEGDI VVEKMRYDAF 
FGTPLDHILR MYGVRHLVVT GTVANICVLH TVASARLRLY DVVVPIDAIA ALNEFDYAAA 
LRQMDFLYKV TLTTTEGVEF Q