| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1078 |
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| Symbol | |
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| ID | 4910023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1014314 |
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| End bp | 1014913 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640124830 |
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| Product | transcription factor |
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| Protein accession | YP_001055969 |
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| Protein GI | 126459691 |
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| COG category | [K] Transcription |
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| COG ID | [COG2101] TATA-box binding protein (TBP), component of TFIID and TFIIIB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTTCTA AGGGCCCTTC TTACCGCATT GAGAACATAG TGGCGACGGT TAACCTAGGC
GTAGAGCTAG ACCTAGAGAG TCTGGCAGAG AGACTCCCCA TGGCCGAATA CAATCCAGAC
CAATTCCCCG GGTTAATCCT CAGACTCACC AAGCCCAGAA TCTCCGCTTT GATTTTTCGC
ACTGGGAAAA TGGTGTGTAC GGGGGCGAAG AACGAGGAGG ATTTGAAAAA CGCCGTTAGG
GCTTTGGTGA AGCTTTTGAA TGACCACGGG GCCGAGGTCC CCTTTGACCC AGAGGTCCAG
ATTCAGAACA TTGTGGCAAG CGGCAACTTA CACGCTGAAG TAGATCTAGA ACAAGCTGTG
TTTATGCTTG AAAATGCAAT GTACGAGCCA GAGCAGTTCC CAGGACTTAT TTATAGAATG
TCGTCGCCTA GGGTTGTCAT ACTTATATTT GGGTCAGGCA AAATTGTCTG TACGGGGGCC
AAGTCTGAGA AGGATGTGGC CACGGCGGTG CAGAAGTTGT ATAACCAGCT GAAGGAGCTT
GGCGTATTGT ACATAGAGGA AGGCGGAGGA GAGGAAGAAG AGGAAGAAGA GGAGATGTGA
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| Protein sequence | MSSKGPSYRI ENIVATVNLG VELDLESLAE RLPMAEYNPD QFPGLILRLT KPRISALIFR
TGKMVCTGAK NEEDLKNAVR ALVKLLNDHG AEVPFDPEVQ IQNIVASGNL HAEVDLEQAV
FMLENAMYEP EQFPGLIYRM SSPRVVILIF GSGKIVCTGA KSEKDVATAV QKLYNQLKEL
GVLYIEEGGG EEEEEEEEM
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