| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1060 |
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| Symbol | |
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| ID | 4908355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1000707 |
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| End bp | 1001573 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640124812 |
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| Product | fumarase alpha subunit |
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| Protein accession | YP_001055951 |
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| Protein GI | 126459673 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.183857 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAGAGC AAGTAATTCT AAAAGTGGCC AAAGAAGTGG TAACACGCGC AAGCGTGGGC
CCCGCCTTCG ACGTCTCTAC AGCCCTTAAA CGGGCATTAG GCGAAGAGAG AAGCGACACG
GCGAAGACGC AACTGGAGGC AATATTGAAG AATATCGAGC TCGCCGAGAG GGAGAAGGCC
GCCGTGTGTC AAGACACCGG CTTCCCAAAC TTCTACATAA AACTGGGAGA CCGCTTCCCA
ATAAGAAGCA GGCTATACGA CATACTTACA CAAGCCGTGC GCGAGGTGAC CAAAGAACTG
CCACTTAGGC CAAACACGGC CCACCCCTTC ACCGAGAAAA ACCCCGGCGA CAACACAGGC
GTCTACGCCC CGTGGTTTGA AGTAGAACTA TTCGACGGAG ATTACCTAGA GTTCCACTAT
GTCCCAAAGG GCGGCGGCAC CGAGCTCCCC AGCAAAGCTC TAACCCTCCC GCCGGGGATA
GCCATGAGGG AGTTGCCCAG ACTCGTGCTA GAGGCCGTGG TAGAGGCAGG CCCCATGCCC
TGTCCCCCGG TGATCGTGGG CGTGGGCATA GGCCCCTCTG TGGACATAGC GGCAAAGCTC
GCAAAGAAGG CCGCTGTACT GCGGCCAGTG GGCTCCCGCC ACCCAGAGCC AGAGATCGCC
AAGATGGAGA CAGAGCTTCT AAAGGCAATA AACAAGCTCG GCATAGGGAC CCACGGCGTC
GGAGGCAACG TGACCGCGCT AGACGTACAC ATAGAGTACG CATATAGGCA CCCAGCTACC
TTCTCCATAG GCATAGTGTT CAGCTGCTGG GCCACGAGGA GGGCAGGCGC CAGAGTATAC
CCCGACGGGA AGTACGAATT CCTCTAA
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| Protein sequence | MLEQVILKVA KEVVTRASVG PAFDVSTALK RALGEERSDT AKTQLEAILK NIELAEREKA
AVCQDTGFPN FYIKLGDRFP IRSRLYDILT QAVREVTKEL PLRPNTAHPF TEKNPGDNTG
VYAPWFEVEL FDGDYLEFHY VPKGGGTELP SKALTLPPGI AMRELPRLVL EAVVEAGPMP
CPPVIVGVGI GPSVDIAAKL AKKAAVLRPV GSRHPEPEIA KMETELLKAI NKLGIGTHGV
GGNVTALDVH IEYAYRHPAT FSIGIVFSCW ATRRAGARVY PDGKYEFL
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