| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1039 |
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| Symbol | |
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| ID | 4908523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 974927 |
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| End bp | 976300 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640124791 |
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| Product | Alpha-amylase |
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| Protein accession | YP_001055930 |
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| Protein GI | 126459652 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000132499 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGATGTAG TACTATTTTT CGAAGTACAC CAGCCGAGGC GTATACGCCC AGACCTACGC
CGAGTGTTTC CCCGTACGCC AAGCGAGCAC GAGGTGTTTT ACGACGAGCT CAACGCCTCG
ATCTTCAAGA GGGTCGTGGA AAAGGTCTAC AGGCCTGCAA CGCGTATAAT CCTGGAGGCG
GCAAGGGAGG TTCCGGGCTT CCGCGTCACC TTCAGCGTCA GCGGCCTCGC CTTGGAGCAG
ATGCGCAAGT GGGCGCCCGA CGTATTGTCA ATGTTTCAAG AGCTCGCGGC CCTCGGCTCT
GAGTTCGTGG CGCAGACCTA CTATCACAGT CTCGCGTGGT TTATAGACAG AGAAGAGTTC
AGGGAGCAGG TGGAGGAGCA TGCTAAGGCT GTGGAAGAGC TAGTCGGCTA TAGGCCGAGG
GCCGCGGAGA ACACCGAGTT TATATACAAC AACGACGTGG CGTGTGCCCT CTGGGAAATG
GGCTTTTCCA CAGTGGTGAC CGAGGGAGTG GAGTGGGTTC TGGGCTGGCG GTCGCCCAAC
TACGTCTACA AGGCGTGGGG ATGCGACGCC AGAGTTTTAA CAAGGAACTA TAGGCTCAGC
GACGACATTG GCTTTAGGTT TGGGGCCAGG TGGTGGGACC AGTGGCCCTT GACCGCCGAC
AAATACGCCG CCTGGCTTGA GGCAACGCCG GGGGACGTAG TGCTTATCGC CGTGGACTAC
GAGACATTTG GCGAACACCA CTGGCCAGAG TCGGGGATAC ACGAGTTCTT GAAGTGGCTC
CCCCGAGAAG TCGCGAAAAG GCCTAGGCTC TCCTTTGCCA CGGTGTCCGA GGCAGCGCAA
CGCTACCCGC CGCGCGACGT CTACGATGTG CCGCCCTGGA GCACCATCAG CTGGGCCGAC
GAACGCGACC TATCGGCGTG GCTCGGCAAC GAGCTCCAGA GAGAGGCCTT CTCCCTACTA
GCGTGGCTAT ACCCATACGC CAAGGCACTA GGCGGCGATG TGCTAAGGCT CTGGCGCCTC
CTCTCCACAA GCGACCACTT CTATTACCAA GCCACTAAGA TGGGGCCCGC GGGGGAGGTG
CACTCATACT TCAGCCCCTA CGGCTCCGCC TACAAGGCTC ACGACGTGTA TATGTCGGCG
TTGACGGCGC TTCTGTTCCA CATACGGGAG AAGTGGACTG TGGAGGCCGC CGAGCGACTA
TCGTTCAAAG ACGAGAGGTG TTTCTGGGCC GAGGGCCTCC GGCTTTGCTC CCTGAAAGAC
CTCAAGAGCG TCGACCGCTC CTTCAAGGAG AGACACAGGG AAGAGCTTTT GAAGTGGCTC
ACCGACGTCT TCCTACTACC CCTCCCCGCC GCAGAGCGGT ATGTACGCTC CTGA
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| Protein sequence | MDVVLFFEVH QPRRIRPDLR RVFPRTPSEH EVFYDELNAS IFKRVVEKVY RPATRIILEA
AREVPGFRVT FSVSGLALEQ MRKWAPDVLS MFQELAALGS EFVAQTYYHS LAWFIDREEF
REQVEEHAKA VEELVGYRPR AAENTEFIYN NDVACALWEM GFSTVVTEGV EWVLGWRSPN
YVYKAWGCDA RVLTRNYRLS DDIGFRFGAR WWDQWPLTAD KYAAWLEATP GDVVLIAVDY
ETFGEHHWPE SGIHEFLKWL PREVAKRPRL SFATVSEAAQ RYPPRDVYDV PPWSTISWAD
ERDLSAWLGN ELQREAFSLL AWLYPYAKAL GGDVLRLWRL LSTSDHFYYQ ATKMGPAGEV
HSYFSPYGSA YKAHDVYMSA LTALLFHIRE KWTVEAAERL SFKDERCFWA EGLRLCSLKD
LKSVDRSFKE RHREELLKWL TDVFLLPLPA AERYVRS
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