| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1028 |
|---|
| Symbol | |
|---|
| ID | 4908823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 965761 |
|---|
| End bp | 966459 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640124780 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001055919 |
|---|
| Protein GI | 126459641 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0187764 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCCAA TGGCGTTCCA AGACTACATA GACGCGCTTC TCTATGTATC AATGGGAATT
CCCACAACCA TGTCTCTCGC GGCTCTGGCG TTCTCAATAG GCATAGTGCT GGGCTCTCTC
TTGCTGTTGA CAAGGTTCTT CTTGCCAAAG CCGTTGCCGT GGATCGCCAC GGCGTACGTC
GAGGCCTTTA GAGGGACTCC CCTGCTCGTG CAGATATTTA TAATCTACTT CGGAGTGGGC
GGCTACTTAA AGGCCTATGG AATCAACCTA GATCCGTTCA CGGCAGGGGT CATCGCGCTG
GGTCTCAACA GCGCAGCCTA CCAGGCGGAG ATCTTCCGAG CCGCCGTTCA GGCAATCCCC
GTGGAGCAGT ACCTCACTGC GGAGGCCTAT GCCTTTACCA AGGCCCAGAC CTTTAGGTAC
ATAATTCTGC CCCAGGCTCT AAGAATTGCC CTGCCCGCCC TCATGAACGA GCTCGTCCTA
CTCATCAAAG ACTCCTCGCT GGTGGCAGTC ATAGGGGTCT TCCCGCCTGA CGTCTTTAGA
AGGGCCGACT ACTTCTCAGC ATCGCGGTTT ATGTACTTCG AGGCGTACAT GGCCGCCGCA
ACTGTATACT TCATCCTCTG TTACACAATG GTTAAGATAA GCCACTGGAT AGAGAGGAGA
TACGCCATAC CCGGCTACTT GAGGAGAGGC ATATTGTAG
|
|---|
| Protein sequence | MAPMAFQDYI DALLYVSMGI PTTMSLAALA FSIGIVLGSL LLLTRFFLPK PLPWIATAYV
EAFRGTPLLV QIFIIYFGVG GYLKAYGINL DPFTAGVIAL GLNSAAYQAE IFRAAVQAIP
VEQYLTAEAY AFTKAQTFRY IILPQALRIA LPALMNELVL LIKDSSLVAV IGVFPPDVFR
RADYFSASRF MYFEAYMAAA TVYFILCYTM VKISHWIERR YAIPGYLRRG IL
|
|---|
| |