Gene Pcal_1021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1021 
Symboldcd 
ID4908510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp959061 
End bp959591 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content59% 
IMG OID640124773 
Productdeoxycytidine triphosphate deaminase 
Protein accessionYP_001055912 
Protein GI126459634 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0717] Deoxycytidine deaminase 
TIGRFAM ID[TIGR02274] deoxycytidine triphosphate deaminase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0208189 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATACTGT CAAACGACGA GTTGAAAAAG CTCATCTCCT TGGGCAAACT GAAGGTAGAC 
CCCCTCTACC CCGACGCGGT GAGAGAGAAT GGCCTCGACC TCCGCATCGG CGGAGAGTAC
GCCATATACG CCTACGAGGG GGCTGTGGTT AGGCCGTGCG ACTTAGACGA CGCTAAGCCG
CTCTTCCGCG TGGTTAAGGC AGACGAGGTG GTTATACCGC CGCGGAACTT CGTGCTTCTG
ACGACTGAGG AGTACGTGAA AATGCCCGAG GACGTGGCCG GCTTGGCAAA CCTCCGCTCC
ACTCTCGCCC GCTACGGCCT CTCTATACCG CCGACCGTGG TAGACGTAGG GTTCGAGGGC
AATATAACCA TCGAGGTGGT GAACAATAGC CCAAACACCA TTGTGCTCAA GAGGGGGATG
CGCTTCCTCC ACCTAGTGCT AATAAAGGCC GAGGGGCGCG CCGCCTACCG CGGCGCCTAC
CAAGGACAGA GAGGGGTCAC CCCGCCCAAG GGCCTCAAGG GAGAGTGTTA A
 
Protein sequence
MILSNDELKK LISLGKLKVD PLYPDAVREN GLDLRIGGEY AIYAYEGAVV RPCDLDDAKP 
LFRVVKADEV VIPPRNFVLL TTEEYVKMPE DVAGLANLRS TLARYGLSIP PTVVDVGFEG
NITIEVVNNS PNTIVLKRGM RFLHLVLIKA EGRAAYRGAY QGQRGVTPPK GLKGEC