Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_0973 |
Symbol | |
ID | 4908302 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 917614 |
End bp | 919029 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640124722 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001055864 |
Protein GI | 126459586 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0283497 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAGGG AGTTTTTCAG AAGCGCATCT GGCGTGGCTG GGTTTGCTAT AATACTGTTG TTCTCTATCA TCGCTATTTA CGTAGTTGCC ACATTTCCCC TGGACTATGG TACACGGTAT TGGTCAAATC CTAAGTATTG GGAGGAGTAC CCCAAGCTTG TGCCGCCTGT CTGGTACAAC TACTTTGTGC CAGAGAAGTT GCCTCAGCAC TATATATCGG AGCTGAGGGC GCCGACTGCG ACGGAGGAGG ATGTGAAGAG GTGGGTCTTT TCTTATAACT TTGACGCTGA TAAGTTTCCC ACTGGCGTTA TTTTAAAATA TGCCAATTTG ACTTTTTATG AATCTCTTCC AATAATCTCT ATAAAGGTAA AGAGGCCGGA CGGGCAAGAG GTTGTATTAA TGGACTTTGA CTCTGGCATC CCATCGCCTC GTCCTGGTGA AAGTCCGCCG TATGTAAGAT TTGTGGAGAA TCCTAGGTCT ATTGTCCTGT CTGTGGAGCC CGGAGTTGTG CGTAGAGCCG CGGAGTTTGC GAGATCTCAA GGCGTTAATT GTACTGTGAC TGAGGTAAGA GAAGCGGTCT TACTGCCGTA TATAATCTTC GGCATACCCC AGAGTAGTAA GTGTAGCGCC GAGTCTTTCA AGCCTCTAAA AGGCACGTAC ATCTTCGAGG TGGAGCTCGT GGGCGACCCT AGAGACCGCG TTGACTATGT TAGACTTATT GTCCAAGGCG CCGTCTACGG CGCAATGGGC ACAGACTACT TAGGACGCGA CTTGGCGCAG GGACTTCTCT TTGGATTCCC CGTCGCGCTT TTCATAGGCG GCGTGGTAGC CGTGTTGGCC ACAGTCATTG GTATGGGCCT CGGTATAGTC AGCGGCTATG TCGGAGGCAA GGTAGATGAG GCTATACAGA GGTTTGCCGA CGTGATGAAC AACCTGCCTC TATTGCCCCT GCTTATTCTC TTTGTATTTG TGCTAGGCAG GAGCTTGTTT AACATTATTT TCGTGCTGGT GGTCTTTGGG TGGGCTGGCA CCACGATCAT AGTGCGCTCC ATGGTTTTGA GCATTAAGAC TAGCCAGTTT GTGGAGGCGG CTAAGCTGGC CGGCGCCTCT AGCTGGTGGA TTATGTGGAA ACACATACTG CCGCCTGTTC TCCCATACTC CTTCGCCTTA ATGATTTTGA ACATCCCCGG CGCCATACTG TCTGAGGCTA GCTTGAGCTT CTTGGGCCTC GGCGATCCCT CTATACCCAC TTGGGGTCAG ATTATGCAAC AGGCTTTTGA CAACGGCGCC TTGCAGAACT TCTCCTGGTG GTGGATACTG CCCCCGGGCA TACTCATAGT GATAACCGCG GTGGGGTTTG TGCTCATCTT CTTTGCCCTA GAGCCTATAG TGAATCCGCG GCTGAGGAGG CAGTAA
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Protein sequence | MIREFFRSAS GVAGFAIILL FSIIAIYVVA TFPLDYGTRY WSNPKYWEEY PKLVPPVWYN YFVPEKLPQH YISELRAPTA TEEDVKRWVF SYNFDADKFP TGVILKYANL TFYESLPIIS IKVKRPDGQE VVLMDFDSGI PSPRPGESPP YVRFVENPRS IVLSVEPGVV RRAAEFARSQ GVNCTVTEVR EAVLLPYIIF GIPQSSKCSA ESFKPLKGTY IFEVELVGDP RDRVDYVRLI VQGAVYGAMG TDYLGRDLAQ GLLFGFPVAL FIGGVVAVLA TVIGMGLGIV SGYVGGKVDE AIQRFADVMN NLPLLPLLIL FVFVLGRSLF NIIFVLVVFG WAGTTIIVRS MVLSIKTSQF VEAAKLAGAS SWWIMWKHIL PPVLPYSFAL MILNIPGAIL SEASLSFLGL GDPSIPTWGQ IMQQAFDNGA LQNFSWWWIL PPGILIVITA VGFVLIFFAL EPIVNPRLRR Q
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