Gene Pcal_0973 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0973 
Symbol 
ID4908302 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp917614 
End bp919029 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content51% 
IMG OID640124722 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001055864 
Protein GI126459586 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0283497 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAGGG AGTTTTTCAG AAGCGCATCT GGCGTGGCTG GGTTTGCTAT AATACTGTTG 
TTCTCTATCA TCGCTATTTA CGTAGTTGCC ACATTTCCCC TGGACTATGG TACACGGTAT
TGGTCAAATC CTAAGTATTG GGAGGAGTAC CCCAAGCTTG TGCCGCCTGT CTGGTACAAC
TACTTTGTGC CAGAGAAGTT GCCTCAGCAC TATATATCGG AGCTGAGGGC GCCGACTGCG
ACGGAGGAGG ATGTGAAGAG GTGGGTCTTT TCTTATAACT TTGACGCTGA TAAGTTTCCC
ACTGGCGTTA TTTTAAAATA TGCCAATTTG ACTTTTTATG AATCTCTTCC AATAATCTCT
ATAAAGGTAA AGAGGCCGGA CGGGCAAGAG GTTGTATTAA TGGACTTTGA CTCTGGCATC
CCATCGCCTC GTCCTGGTGA AAGTCCGCCG TATGTAAGAT TTGTGGAGAA TCCTAGGTCT
ATTGTCCTGT CTGTGGAGCC CGGAGTTGTG CGTAGAGCCG CGGAGTTTGC GAGATCTCAA
GGCGTTAATT GTACTGTGAC TGAGGTAAGA GAAGCGGTCT TACTGCCGTA TATAATCTTC
GGCATACCCC AGAGTAGTAA GTGTAGCGCC GAGTCTTTCA AGCCTCTAAA AGGCACGTAC
ATCTTCGAGG TGGAGCTCGT GGGCGACCCT AGAGACCGCG TTGACTATGT TAGACTTATT
GTCCAAGGCG CCGTCTACGG CGCAATGGGC ACAGACTACT TAGGACGCGA CTTGGCGCAG
GGACTTCTCT TTGGATTCCC CGTCGCGCTT TTCATAGGCG GCGTGGTAGC CGTGTTGGCC
ACAGTCATTG GTATGGGCCT CGGTATAGTC AGCGGCTATG TCGGAGGCAA GGTAGATGAG
GCTATACAGA GGTTTGCCGA CGTGATGAAC AACCTGCCTC TATTGCCCCT GCTTATTCTC
TTTGTATTTG TGCTAGGCAG GAGCTTGTTT AACATTATTT TCGTGCTGGT GGTCTTTGGG
TGGGCTGGCA CCACGATCAT AGTGCGCTCC ATGGTTTTGA GCATTAAGAC TAGCCAGTTT
GTGGAGGCGG CTAAGCTGGC CGGCGCCTCT AGCTGGTGGA TTATGTGGAA ACACATACTG
CCGCCTGTTC TCCCATACTC CTTCGCCTTA ATGATTTTGA ACATCCCCGG CGCCATACTG
TCTGAGGCTA GCTTGAGCTT CTTGGGCCTC GGCGATCCCT CTATACCCAC TTGGGGTCAG
ATTATGCAAC AGGCTTTTGA CAACGGCGCC TTGCAGAACT TCTCCTGGTG GTGGATACTG
CCCCCGGGCA TACTCATAGT GATAACCGCG GTGGGGTTTG TGCTCATCTT CTTTGCCCTA
GAGCCTATAG TGAATCCGCG GCTGAGGAGG CAGTAA
 
Protein sequence
MIREFFRSAS GVAGFAIILL FSIIAIYVVA TFPLDYGTRY WSNPKYWEEY PKLVPPVWYN 
YFVPEKLPQH YISELRAPTA TEEDVKRWVF SYNFDADKFP TGVILKYANL TFYESLPIIS
IKVKRPDGQE VVLMDFDSGI PSPRPGESPP YVRFVENPRS IVLSVEPGVV RRAAEFARSQ
GVNCTVTEVR EAVLLPYIIF GIPQSSKCSA ESFKPLKGTY IFEVELVGDP RDRVDYVRLI
VQGAVYGAMG TDYLGRDLAQ GLLFGFPVAL FIGGVVAVLA TVIGMGLGIV SGYVGGKVDE
AIQRFADVMN NLPLLPLLIL FVFVLGRSLF NIIFVLVVFG WAGTTIIVRS MVLSIKTSQF
VEAAKLAGAS SWWIMWKHIL PPVLPYSFAL MILNIPGAIL SEASLSFLGL GDPSIPTWGQ
IMQQAFDNGA LQNFSWWWIL PPGILIVITA VGFVLIFFAL EPIVNPRLRR Q