| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0971 |
|---|
| Symbol | rps4p |
|---|
| ID | 4908598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 916614 |
|---|
| End bp | 917093 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640124720 |
|---|
| Product | 30S ribosomal protein S4P |
|---|
| Protein accession | YP_001055862 |
|---|
| Protein GI | 126459584 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01018] ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.160491 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGGTT TGAAGAAGCC TAAGAAGAAG TACCTCGCTG GTAAGCCTAA GAAGATTTGG
AATAAGCAGC TGTTGCTAGA GGAGCTTCAG CTAATGGGCG AGTATGGGCT AAGGAACAAG
AAGGAGCTTT GGCTTGCTAG AGCTAGGCTT AAGTGGATTG TGAGGCGCGC CCGCGCCCTG
TTGTCCATGA CCGCAGAGGA GAGGGCCCCG CTGGAGGTGC CGTTTAAGGA GAAGCTGTAC
AAGATGGGCT TCATCGAGGA TCCCAACGTG CCGTTGGACA GAATACTCTC CCTCGACGTA
AGAGCCATAT TGGAGAGGAG GTTGCAGACT CTGGTGTTTA GAATGGGCCT CGCCAAGTCT
ATCCACCACG CGAGGCAGCT CGTGGTGCAC GGCCATGTGT TAGTCGCGGG GAGGCGGGTC
ACGTCGCCGG GCTTCCTCGT GCCCAGAGAG CTTGAGGACA AAATCACGAT AGAACAATAG
|
|---|
| Protein sequence | MGGLKKPKKK YLAGKPKKIW NKQLLLEELQ LMGEYGLRNK KELWLARARL KWIVRRARAL
LSMTAEERAP LEVPFKEKLY KMGFIEDPNV PLDRILSLDV RAILERRLQT LVFRMGLAKS
IHHARQLVVH GHVLVAGRRV TSPGFLVPRE LEDKITIEQ
|
|---|
| |