Gene Pcal_0967 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0967 
Symbol 
ID4908801 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp914350 
End bp915060 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content56% 
IMG OID640124716 
Producthypothetical protein 
Protein accessionYP_001055858 
Protein GI126459580 
COG category[S] Function unknown 
COG ID[COG1801] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0645546 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAGGTGT TAGTGGGCAC ATGCGGCTTT CCCAAGTCGC GCCGACAAAT ATACTCAACG 
CTGGATGTAG CTGAGCTACA AGAGACGTTC TACAATATGC CAAACAGAGG GAAGATGCAG 
GCCTTGAGGG AGGAGGCGCC GGGCTTCCAC TTCACAGTCA AAGTCTTCCA GGGGTTGACG 
CACCCGGCGG ATAGCCCCAC TTTTAAAAGG ACGAAGGGGT TCAAGCCCAC TGAGAGACAC 
GGCCTGCTGA AGCCCACCGA GGAGAATTTC CAGCTGTGGA ACGAGTTTGT AGACTCCGTG 
GCGCCTCTCC GCCCAGAGGT CTTAGTGTTT CAGACGCCGC CTAGCCTAAA GCCGGAGCCC 
TACATATACG ACTTCTTTGC CTCGGTGGCT GGCGCCGGGT TCAAAGTCGC GTGGGAGCCC 
CGTGGCGAGA CTTACAAAGA CCCCACGCTC ATTGAGAGAG TGGCGTCTCT CGGGGTAGTC 
ATTGTAGTGG ATCCCCTAAA GAGGGCGCCG TTGCGGGGCG GGATTTACTA CTTTAGGCTA 
CACGGACTCC CGGGAGAGGT GAACTACCGC TATAAGTACA CCGACGACGA TTTACGGAAG 
CTGGCAGAAA TTATCAAGTC GCTGGAGGGG GAGGCGGCGT ACGTCCTCTT CAACAACGTC 
TACATGTTTG ACGATGCGAG AAGATTCAAG TCGATAATAA GAGGGGGGTA G
 
Protein sequence
MEVLVGTCGF PKSRRQIYST LDVAELQETF YNMPNRGKMQ ALREEAPGFH FTVKVFQGLT 
HPADSPTFKR TKGFKPTERH GLLKPTEENF QLWNEFVDSV APLRPEVLVF QTPPSLKPEP 
YIYDFFASVA GAGFKVAWEP RGETYKDPTL IERVASLGVV IVVDPLKRAP LRGGIYYFRL 
HGLPGEVNYR YKYTDDDLRK LAEIIKSLEG EAAYVLFNNV YMFDDARRFK SIIRGG