| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0952 |
|---|
| Symbol | |
|---|
| ID | 4909779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 899154 |
|---|
| End bp | 900194 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640124700 |
|---|
| Product | DNA primase large subunit |
|---|
| Protein accession | YP_001055843 |
|---|
| Protein GI | 126459565 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2219] Eukaryotic-type DNA primase, large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCTTGCG ATATTTCTGC CGACGTATTT GCCTGCTACT TCCCCTTTTT AAACAGGTCT
GCGTCTTATT TGGCCAAAAG GGGGTACGTA TTAGAGAGCG TGCTTGACGA CAGAGATATG
GTGGAAAAAG CCATTGAGCG CGTGAGGAGG GCTGTGGCCC GCGAGAGTTT TAACGCCAAG
TCGTGTTTAG ACAGACCAGA GGAGGGTGCC GTGGTGGCCA GGCTGGCCCT GTACCTAGCC
GCCGCGACTG GGAGTAGCCA CATACTGCGT AGATTTGCCG ACTACGAGAG CAAAAATTTC
GCAAGTCTCT TAGACAAAAT CCCTGGCGTT CAAAGCCCGG GGTGCAAAAT TGAGATTGGA
AAAGACTTAG GCATCTACGC CAAGCCGTCG CAAGAGGTTA TGTCAGGCAT AGCCGTGGTA
CAATTCCCCA TAGCCGTTAG ATGGTCGACA TATCTAAAGT ATGCGCCACA GGATCCCCAT
TGGGCAATGA TAAACCGAGT TGTAGTCAGG GGGTGGGTGC TCTTGCCCAT GGCAGACTAC
CATAGGCTAC TAGAGGAGGC GTATGAGGAG CGGATATTAA AGACGGTAGA CGAAAACGAG
CTGGCCGTGG GCAAAGTCGC CATGAAGGTC GATATGTCAA AACTCGAGGA CCTCGTCAAG
AAGTACTCCT ACAAGCCGCT TCCGCAGGCC CCCGTCGCCG GAGGCCCAGA TCCCCCCTGT
ATGAAGGCCA TACTAGACGC GTTAAAGGCC GGGGAAAATC TGCCACACAC GGCGCGGTTT
GCCATAACGA CGTATTTACT CAAGAGGGGG TGGGACGTGG AACAGATAGT CGACTTATTC
CGGAACGCGC CAGACTTCAA CGAGAAGATT ACGCGATACC AGGTCCAACA CATAGCTGGC
AAAGTTGGGG GTAGGAAGGA GTACGCCGTG CCCAGTTGCG AAACCATGAA CTCCTGGGGC
CTATGCCCCA CAAACCTTGG GTGTAATGTC CGCAATCCTC TCCAGTATGG CAAAAGAGTC
GCCGTTAAGA AGAGTAGTTG A
|
|---|
| Protein sequence | MSCDISADVF ACYFPFLNRS ASYLAKRGYV LESVLDDRDM VEKAIERVRR AVARESFNAK
SCLDRPEEGA VVARLALYLA AATGSSHILR RFADYESKNF ASLLDKIPGV QSPGCKIEIG
KDLGIYAKPS QEVMSGIAVV QFPIAVRWST YLKYAPQDPH WAMINRVVVR GWVLLPMADY
HRLLEEAYEE RILKTVDENE LAVGKVAMKV DMSKLEDLVK KYSYKPLPQA PVAGGPDPPC
MKAILDALKA GENLPHTARF AITTYLLKRG WDVEQIVDLF RNAPDFNEKI TRYQVQHIAG
KVGGRKEYAV PSCETMNSWG LCPTNLGCNV RNPLQYGKRV AVKKSS
|
|---|
| |