Gene Pcal_0952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0952 
Symbol 
ID4909779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp899154 
End bp900194 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content53% 
IMG OID640124700 
ProductDNA primase large subunit 
Protein accessionYP_001055843 
Protein GI126459565 
COG category[L] Replication, recombination and repair 
COG ID[COG2219] Eukaryotic-type DNA primase, large subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCTTGCG ATATTTCTGC CGACGTATTT GCCTGCTACT TCCCCTTTTT AAACAGGTCT 
GCGTCTTATT TGGCCAAAAG GGGGTACGTA TTAGAGAGCG TGCTTGACGA CAGAGATATG
GTGGAAAAAG CCATTGAGCG CGTGAGGAGG GCTGTGGCCC GCGAGAGTTT TAACGCCAAG
TCGTGTTTAG ACAGACCAGA GGAGGGTGCC GTGGTGGCCA GGCTGGCCCT GTACCTAGCC
GCCGCGACTG GGAGTAGCCA CATACTGCGT AGATTTGCCG ACTACGAGAG CAAAAATTTC
GCAAGTCTCT TAGACAAAAT CCCTGGCGTT CAAAGCCCGG GGTGCAAAAT TGAGATTGGA
AAAGACTTAG GCATCTACGC CAAGCCGTCG CAAGAGGTTA TGTCAGGCAT AGCCGTGGTA
CAATTCCCCA TAGCCGTTAG ATGGTCGACA TATCTAAAGT ATGCGCCACA GGATCCCCAT
TGGGCAATGA TAAACCGAGT TGTAGTCAGG GGGTGGGTGC TCTTGCCCAT GGCAGACTAC
CATAGGCTAC TAGAGGAGGC GTATGAGGAG CGGATATTAA AGACGGTAGA CGAAAACGAG
CTGGCCGTGG GCAAAGTCGC CATGAAGGTC GATATGTCAA AACTCGAGGA CCTCGTCAAG
AAGTACTCCT ACAAGCCGCT TCCGCAGGCC CCCGTCGCCG GAGGCCCAGA TCCCCCCTGT
ATGAAGGCCA TACTAGACGC GTTAAAGGCC GGGGAAAATC TGCCACACAC GGCGCGGTTT
GCCATAACGA CGTATTTACT CAAGAGGGGG TGGGACGTGG AACAGATAGT CGACTTATTC
CGGAACGCGC CAGACTTCAA CGAGAAGATT ACGCGATACC AGGTCCAACA CATAGCTGGC
AAAGTTGGGG GTAGGAAGGA GTACGCCGTG CCCAGTTGCG AAACCATGAA CTCCTGGGGC
CTATGCCCCA CAAACCTTGG GTGTAATGTC CGCAATCCTC TCCAGTATGG CAAAAGAGTC
GCCGTTAAGA AGAGTAGTTG A
 
Protein sequence
MSCDISADVF ACYFPFLNRS ASYLAKRGYV LESVLDDRDM VEKAIERVRR AVARESFNAK 
SCLDRPEEGA VVARLALYLA AATGSSHILR RFADYESKNF ASLLDKIPGV QSPGCKIEIG
KDLGIYAKPS QEVMSGIAVV QFPIAVRWST YLKYAPQDPH WAMINRVVVR GWVLLPMADY
HRLLEEAYEE RILKTVDENE LAVGKVAMKV DMSKLEDLVK KYSYKPLPQA PVAGGPDPPC
MKAILDALKA GENLPHTARF AITTYLLKRG WDVEQIVDLF RNAPDFNEKI TRYQVQHIAG
KVGGRKEYAV PSCETMNSWG LCPTNLGCNV RNPLQYGKRV AVKKSS