| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0935 |
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| Symbol | |
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| ID | 4909368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 885357 |
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| End bp | 886055 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640124683 |
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| Product | putative RNA-associated protein |
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| Protein accession | YP_001055826 |
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| Protein GI | 126459548 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1500] Predicted exosome subunit |
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| TIGRFAM ID | [TIGR00291] rRNA metabolism protein, SBDS family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAAAGA AAGTGGCCGT GGCCAAGCTG GACAGGCAGG GAGAGCACTT TGAAATCCTC
ATAGACCCCG ACGCGGCTCT GGAGCTGAAA ATGGGGAAGC CCCTGGGGAT AGACAAAGTC
CTCATACACG AGGAGGTGTA CAAGGACGCG AAGAAGGGCC TACGCGCCTC TGAACAAGCC
TTGAAGAAGG TGTTTGGAAC TACCGACGTG AGGAAGATAG CGGAGATAAT CATAAAGGAG
GGGGAAATCC CCCTCACGGC TGAGCAGAGG AGGCGGCTTA TTGAGGACAA GAGGCGCCAG
ATAGTGGAGT GGATCTCCCG CAACTGTATA GACGTTAGGA CAAAGACGCC AGTTCCTCCC
CAGAGGGTGG AAAACGCATT AGAACAGGCG CGGGTGTCCA TAGACCCCTT TAAGCCTGCC
GAGGAGCAGG TGCAGGAGAT ACTGAAGGAG CTACAGAGAA TTTTGCCCAT AAAGGTGGCC
ACGGCGCGCA TGTCTCTTTC GGTGTCGTCT ACCTACGCCC AGAAGGTGAA AGGCCTAGTG
GCCAAGATGG CGAAAATTGT AAACGAGCGC TACAAGTCAG ACGGGTCTTG GGAAGCCGTG
GTGGAGCTAC CGGCGGGGTT GCAAGACGTG TTGATATCTA AGGTAAACGA CGTGACTCAC
GGCGACGTTG ACATCAAAAT ACTTGAAATA GTGTACTAA
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| Protein sequence | MTKKVAVAKL DRQGEHFEIL IDPDAALELK MGKPLGIDKV LIHEEVYKDA KKGLRASEQA
LKKVFGTTDV RKIAEIIIKE GEIPLTAEQR RRLIEDKRRQ IVEWISRNCI DVRTKTPVPP
QRVENALEQA RVSIDPFKPA EEQVQEILKE LQRILPIKVA TARMSLSVSS TYAQKVKGLV
AKMAKIVNER YKSDGSWEAV VELPAGLQDV LISKVNDVTH GDVDIKILEI VY
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