Gene Pcal_0925 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0925 
Symbol 
ID4909124 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp878470 
End bp879537 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content59% 
IMG OID640124673 
Productradical SAM domain-containing protein 
Protein accessionYP_001055816 
Protein GI126459538 
COG category[R] General function prediction only 
COG ID[COG1313] Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGGGAGA GGCTTAGGTG GTACTACGCC GTTATGCGGA ACATTGCGCC AGCCAAATAC 
CACATTGCGG CTAGGGTTGA GGCCCCCCGT GACTTTGCGG CAATGGGCGA CGGGGAGCTG
TGGAAGTTGC ACGAGGAGCT GGGCCGCGTC TTTGACGAGG CGTGGGCTGA GCAGAGGGCG
AGGCCGGACT TCTCCCTTGC CTCTAGGGGG CTCCCAGAGG CCTCGTTTTT GGATGTGAAG
ATTGAGCTTG CTGAGAGGCA GTTGAGGAGG TGTATGTTGT GCGAACGAAG GTGCGGCGTC
GATAGAACTA GGGGGAGGGG GGCGTGTCTC TTGGACGCCA GGGCCAGAGT TGCGTCGTTT
TTCCACCACT TGGGCGAAGA GGCACCGCTG GTGCCCTCTG GCACGATCTT CTTCGCCGGG
TGCAATTTCA GATGCGTTTA CTGCCAGAAC TGGGACATAT CGCAGGACCC CGAGGCAGGC
GTCGAGGTTA CGGCTGAGGC CCTCGCGGCG ATGCAGATCC GCCTCAGGGA GGAGGGGGCG
AGGAACATCA ACTGGGTCGG CGGCGAGCCC ACTCCTAATA TACCCTGGAT ATTGAAGTCG
CTCAAGATTT TGGCCCGCCG CGGCGTCAAT GTGCCACAGC TCTGGAACTC AAACATGTAC
CTAACCCCCG AGGGGCTCTC CCTCATCCTC CACGTAATTG ATATCTGGCT TCCCGACTTC
AAGTATGGGA ACAACGCCTG CGCTTTGCGG TACTCAGTGG CGCCTAGGTA TTGGGAGGTC
GTCACGCGCA ACTTCTCAGT TATATGCAGG AGGGGGGAGG ACATAATTGT ACGCCACTTG
GTCCTCCCTG GCCACGTGGA GTGTTGTACA AAGCCTGTCC TCAAGTGGCT TGCCGAGAAC
TGCCGCCACG CCCTTGTCAA CATAATGGAC CAGTACAGGC CTGAGTACCT TGTGCCAAAG
TTGGACAAGT ACAAGGAGAT TAGGAGGCGC GTCTCCGAGG AGGAGATGGA GGAAGCCTAC
AAGTACGCAG ACGCCCTCGG CTTGGCGTGG AGAGAGGTAA CCCGCTAG
 
Protein sequence
MRERLRWYYA VMRNIAPAKY HIAARVEAPR DFAAMGDGEL WKLHEELGRV FDEAWAEQRA 
RPDFSLASRG LPEASFLDVK IELAERQLRR CMLCERRCGV DRTRGRGACL LDARARVASF
FHHLGEEAPL VPSGTIFFAG CNFRCVYCQN WDISQDPEAG VEVTAEALAA MQIRLREEGA
RNINWVGGEP TPNIPWILKS LKILARRGVN VPQLWNSNMY LTPEGLSLIL HVIDIWLPDF
KYGNNACALR YSVAPRYWEV VTRNFSVICR RGEDIIVRHL VLPGHVECCT KPVLKWLAEN
CRHALVNIMD QYRPEYLVPK LDKYKEIRRR VSEEEMEEAY KYADALGLAW REVTR