Gene Pcal_0778 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0778 
Symbolrpl30p 
ID4910123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp747141 
End bp747680 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content54% 
IMG OID640124527 
Product50S ribosomal protein L30P 
Protein accessionYP_001055670 
Protein GI126459392 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1841] Ribosomal protein L30/L7E 
TIGRFAM ID[TIGR01309] 50S ribosomal protein L30P, archaeal 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGCGG CAACTGAGCA AAAGACGGTG TACCCCCGCT ACGCCGTAAT TAGGCTCAGA 
GGTATACCCA CCACTCCGGG TGACATTGCC GCGACGCTTG ACTTGTTGAG GCTTAGGAGG
AAGTTCACCA TGGTGGTGGT AGTGGGCTCT CCAAGTGTCA TGGGCATGAT AGAAAGGGTG
AATGACTGGG TCACTTGGGG GGAAATTGAC GCAGATACTC TCGCAGAGGT GTTGCGTAAG
AGGGGGCGAA TTGTGGGCGA CAAGCCGCTT ACGCTTGAAT ACCTCCAGAA GTGGGGGTGG
AACTCCTTTG AGGAAGTGGC CCTCGCGTAC ATCTCCGGGG AGATAGAGAC GCTTGCGTGT
AAAAAGGACT TCAAGGCTAG GGAGGGGCAA CGGCCGCCGT GTATTCCATA CCTAAAGCCC
TTCTTCCGCT TACATCCGCC TAGAGGCGGC CTCAACAGTG TAAAATTGCA CTTCTCTGTG
GGAGGCGACT TGGGCTACAG AGGGCCTTTG ATCAACGACT TAATTAAGAG AATGCTCTAA
 
Protein sequence
MMAATEQKTV YPRYAVIRLR GIPTTPGDIA ATLDLLRLRR KFTMVVVVGS PSVMGMIERV 
NDWVTWGEID ADTLAEVLRK RGRIVGDKPL TLEYLQKWGW NSFEEVALAY ISGEIETLAC
KKDFKAREGQ RPPCIPYLKP FFRLHPPRGG LNSVKLHFSV GGDLGYRGPL INDLIKRML