Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_0778 |
Symbol | rpl30p |
ID | 4910123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 747141 |
End bp | 747680 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640124527 |
Product | 50S ribosomal protein L30P |
Protein accession | YP_001055670 |
Protein GI | 126459392 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1841] Ribosomal protein L30/L7E |
TIGRFAM ID | [TIGR01309] 50S ribosomal protein L30P, archaeal |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGCGG CAACTGAGCA AAAGACGGTG TACCCCCGCT ACGCCGTAAT TAGGCTCAGA GGTATACCCA CCACTCCGGG TGACATTGCC GCGACGCTTG ACTTGTTGAG GCTTAGGAGG AAGTTCACCA TGGTGGTGGT AGTGGGCTCT CCAAGTGTCA TGGGCATGAT AGAAAGGGTG AATGACTGGG TCACTTGGGG GGAAATTGAC GCAGATACTC TCGCAGAGGT GTTGCGTAAG AGGGGGCGAA TTGTGGGCGA CAAGCCGCTT ACGCTTGAAT ACCTCCAGAA GTGGGGGTGG AACTCCTTTG AGGAAGTGGC CCTCGCGTAC ATCTCCGGGG AGATAGAGAC GCTTGCGTGT AAAAAGGACT TCAAGGCTAG GGAGGGGCAA CGGCCGCCGT GTATTCCATA CCTAAAGCCC TTCTTCCGCT TACATCCGCC TAGAGGCGGC CTCAACAGTG TAAAATTGCA CTTCTCTGTG GGAGGCGACT TGGGCTACAG AGGGCCTTTG ATCAACGACT TAATTAAGAG AATGCTCTAA
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Protein sequence | MMAATEQKTV YPRYAVIRLR GIPTTPGDIA ATLDLLRLRR KFTMVVVVGS PSVMGMIERV NDWVTWGEID ADTLAEVLRK RGRIVGDKPL TLEYLQKWGW NSFEEVALAY ISGEIETLAC KKDFKAREGQ RPPCIPYLKP FFRLHPPRGG LNSVKLHFSV GGDLGYRGPL INDLIKRML
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