| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0744 |
|---|
| Symbol | |
|---|
| ID | 4908800 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 702116 |
|---|
| End bp | 703021 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640124493 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_001055636 |
|---|
| Protein GI | 126459358 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0000160856 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTT ACGTCAACTT TGAGCTCCCC GAAGAGGCGC GTAGGCTCTT AGAGGGGTTT
GAAGTGGTGG GCCCCGGCGG AGACTTGTCG GAGGTGGAGG CGGCATTGGT GACTAGGCTC
ACGCCGGAGG AGTTGGCTAA GATGCCCAGG CTCAGGTTTA TACAAGTGGC GCTGGCTGGG
CTAGATCACC TCCCGTGGGA GCACATTCCT CCCAACGTGG TGGTGGCGGG CAACGCGGGG
AGTAATGCAG ACGCCGTGGC GGAGTTCGCG CTGGGCATGT TGCTGGCGGC GTATAAGAAG
ATTGTTCAGT ACAACGAGCG GATGAAGAGG GGGGAGTACG ACCGGGTCTA CGCCGTCCCC
ATGCTTAGGG GGAGGAAGGT AGCCGTCCTG GGGCTGGGGG AGATAGGGAC ACGCGTGGCT
AAAATCCTCG CGGCGCTGGG GGCAGAGGTC TGGGGCTTCT CTAGGTCGAG GAGGGAGGGG
CCGTGGCGCT TTACCACGAG CCTCGAGGAG GCGCTCCGGG GGGCCTCCGC CGCCGTGTGC
GCCCTCCCCC TCAACAAGCA CACCAGAGGG CTGATACGGT ACGAGCACCT GGCCCTGATG
GCAGAGGACG CCGTCTTTGT CAACGTAGGC CGCGCTGAGG TGGTAGACAG GGAGGGGGCC
TTACGCATTT TGAAGGAGCG GCCGCGGTTT GTCTTCGCAA GCGACGTGTG GTGGGGGAGG
AACAACTTTG CAAAAGACGC CGAGTTTTTC GCTCTCCCAA ACGTGGTGGC CACCCCCTGG
GTCGCCGGGG GTTACGGGAG TGAGGAGGTT TGGAGAGAGA TGGCTGTGGA GGCGGTCAAA
AACCTCTTGG CATGGGCCAG GGGCGAGACG CCGAAGAATA TCGCAAAAAG GAGCGACTAC
GTTTAA
|
|---|
| Protein sequence | MKIYVNFELP EEARRLLEGF EVVGPGGDLS EVEAALVTRL TPEELAKMPR LRFIQVALAG
LDHLPWEHIP PNVVVAGNAG SNADAVAEFA LGMLLAAYKK IVQYNERMKR GEYDRVYAVP
MLRGRKVAVL GLGEIGTRVA KILAALGAEV WGFSRSRREG PWRFTTSLEE ALRGASAAVC
ALPLNKHTRG LIRYEHLALM AEDAVFVNVG RAEVVDREGA LRILKERPRF VFASDVWWGR
NNFAKDAEFF ALPNVVATPW VAGGYGSEEV WREMAVEAVK NLLAWARGET PKNIAKRSDY
V
|
|---|
| |