Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_0672 |
Symbol | |
ID | 4909729 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | + |
Start bp | 634363 |
End bp | 635820 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640124421 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001055564 |
Protein GI | 126459286 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.565437 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTATAATG CGCAAACTGT TTTAACTACA CAGCGGGGTG TCCATGTGAT AGTATTTCAC CTACACCTCT ACCAGCCCGA GCGCGCAGAT CCCTGGCTCG AGATCATCTT CCCCGAGCCC TCTGCCTCGC CCTTTAGGCA CTGGAACGAG CGCGTGTCGC ACGAGTGCTA CGAGCCCAAC GCGGAGTTGG GCAACTACAA GTGGGTCAGC TTCGACGTGG GCCCCACGCT GTTGACCTGG CTACGGCGGA GTAGGCCGGT GGTGTACAAT GCCTTGCTCG AGGGCGACAA GGCGGGGCTG GAAAGGTGGG GCCACGGCAA CGCCATAGCG CACCCCTACT ACCACGTGAT CCTGCCCCTA GTCCCCAGGC GAGACCGAGA GGTGTTAATC CACTGGGGCG TGGAGTATTT CAAGAGGCAC TTCAAGAGGA GCCCAGAGGG GATGTGGCTC CCCGAGATGG CCGTGGACCT CGAGACGCTG GAGGTTCTGG CCGACTACGG CATATCTTAC ACAGTCCTCT CCCAAGGCCA GGTGAAGGGA GGGAGGGCCG GGGGGCCCTA CAAGGTGGTT CTGCCCAGCG GGCGCTCCAT CGCCGTCTTT ATACGCAACG ACGCGGTATC CAACGCCCTG GCCTTCCAAG GCTTTGAAAA ATTCGCCGAG ACACTCAGAG GCGTAGAGGG CGACGTAGTA GTGGCCCTAG ACGGGGAGAC CTTTGGACAC CACATAAAAG GCGGCGACAA GCTCCTCGCC GACTTCATAT CCCGGCACAA GGACCACCTG GCCAACCTCG GCTGGCTCTA CGAGAGGGGG GTCAAGGGAG AGGTAGAGAT CGTGGAAAGG ACGTCGTGGA GTTGCCCCCA CGGGCTGGGC CGCTGGAGCA GAGACTGCGG ATGCGACGGG CCTGCGCCCT GGAGAGAGGG ACTGAGGAAG CTAGTTGACT GGGTTGGGGA GGCGGTGGAC AAGGCCTTTG AGGAGAGGCT GGGCCCAGGG GGGTGGGACA CGTTGAAGCG CTACATAGAC GTGTTGATGG GCGGCGACCG CGGGGGATAC ACCACGGAGC AGTTGAAGCT TTTAGAGGCC CAGCGGGCGA AGCTCGCCGC TAATACGAGC GACGCTTGGT TCTTCGCGAG GGTGGGCATA GAGTTCGGGA TAGCCGTCAA GTGGGCCCTG AGGGCAGTGG AGTTGCTAGA CGACCCAAGC CCCGTCGAAG AGTTCATGCG CCGGCTAGAC GAGATTGCGA TAGACGGCAA GACGGCCCTG GCCCTATGCC CCCGCGTGAG GGGCCCCCTC ATGGCCGCCA TGATGTACGT AGCCAGAGCC ACCGCCGGCT TCCAGGAGGA GAGGGTGGGG CCCTACATAG TGAAGCCCAT CAACGACGAA TTCGAAATCG TGGACGAGAG GACCCGCGAA GTCTTTAGAT TTCGACACGA CCTCTTATGG GGTTTCGAAA AAATTTAA
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Protein sequence | MYNAQTVLTT QRGVHVIVFH LHLYQPERAD PWLEIIFPEP SASPFRHWNE RVSHECYEPN AELGNYKWVS FDVGPTLLTW LRRSRPVVYN ALLEGDKAGL ERWGHGNAIA HPYYHVILPL VPRRDREVLI HWGVEYFKRH FKRSPEGMWL PEMAVDLETL EVLADYGISY TVLSQGQVKG GRAGGPYKVV LPSGRSIAVF IRNDAVSNAL AFQGFEKFAE TLRGVEGDVV VALDGETFGH HIKGGDKLLA DFISRHKDHL ANLGWLYERG VKGEVEIVER TSWSCPHGLG RWSRDCGCDG PAPWREGLRK LVDWVGEAVD KAFEERLGPG GWDTLKRYID VLMGGDRGGY TTEQLKLLEA QRAKLAANTS DAWFFARVGI EFGIAVKWAL RAVELLDDPS PVEEFMRRLD EIAIDGKTAL ALCPRVRGPL MAAMMYVARA TAGFQEERVG PYIVKPINDE FEIVDERTRE VFRFRHDLLW GFEKI
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