Gene Pcal_0654 details

Gene Information

• Locus tag: Pcal_0654
• ID: 4908718
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 617423
• End bp: 619528
• Gene Length: 2106 bp
• Protein Length: 701 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 640124403
• Product: hypothetical protein
• Protein accession: YP_001055546
• Protein GI: 126459268
• TIGRFAM ID: [TIGR01451] conserved repeat domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAAAAGT GGTTAATACT CGCGGCACTT CTAGCGGCGC TGGCCTATTC CCAGGCCGTC 
GTATTTACGC CTAAGGTGGA CTACCTATTC CTCGGAGCTC AGTGGGTACA GGTGCCGAAG 
TTTCCAGGCG ATGTCGGAGT AATCTCGCTG TCCTTCTACC TGGCTGACCA ATATGTCGAC 
GTGTCTATTA GCCTCAGCCC CCAGTGTCCC TATCTCACCG CACTTGGAAG CGCCCAGATG 
CCCACCGCGG GACCCGGAGT GGTCACTGCG ACGCTGAAGG TCATGGCCAC GGCGCTGAAC 
GCCACCTGTC CCACAAACGT CTACCTAAAG GCCACCTACA AGGCGTCTGG CTCCACTCTC 
ACAAACGGCA TCGAGAAGCT TGAGTACGTC TCCGTGTACA TACCGCCGTA CCCCACGGCG 
CAGGTATACG CAGAAGGCGC CGCCTACGTG GGCCTGCCCT CCACTGTAAA GCTCGTTGTG 
GTGTCTCCCT ACCTCTTGAC GGGAGCTGTG TCTGTGCAAG GCCAGGGTGC GCGCGTCGTT 
GCGCCCACGG GCCCCGTAGT TGTTAACTCT ACCAGGGCGG AGATACCCGC GACTCTTATC 
GCCGACTCCT ACACGGCCGC CCTCGCAGTA GTCATCAACA GTAGAGACTG GCTGGGGAAC 
CCCGTCACGT TGACGTACAC AGTGCCCATC TCCGCCGCGC CGCCCCCGCC CGCCGTGGTG 
TCCATAAGCC CCACAATGCT CTCGGCGAAT AAGTACAACG CGGTGAACAT AACAGTGGCG 
TTGCCCATAC GCGCCAACGG CACAGCCACG GCGACAGTGG CCGGAGGCAT AATGCCGCAG 
TCCGCCGTGA CCTTCCCCAT AGTAAACGGC GTGGGGAAGG CCACCGTCTC CGTCTACCCC 
ACGGCAAGCG TAGTGACGTT CAACGTGGTG GCCACCTACC AAGCGGCTGG GGTAGCCCGG 
ACTGAGCAAG TCGCCGCCTC GGCGGCGGTG CAACAGACCT TCGGCGGCCT CTCAAGGCTA 
CAGGTGGCGC CGAGCAAGCT GATAGCGGGC ATAGCCAACA ACGTGACGTT GGTGGTGCAG 
GCCCCCGGCC CCTTCAACGT CTCAGTGACT GTGACCGGCG CGGCGTCGGA CAAGCCCTCC 
CCCTACTACT TCGGCGGAGT AGACAAGGCC ACGGCTAACC TCCTCTTAAC CCCGCTTTCC 
ACTCAGCCCG TCTCTCTCAC AGTGTACGTC TACCACAGCG CCGGTGTCGA CCAGTACGTG 
GTCAATCTGC CCGTGGTGTC CTCCAGCATT TTTACCGTCT TGCCCACCCC CAGCGTTGTT 
AAAAGCGGCG GCAATCGCAC AGTCACTATT ACGGTGATTA ACAGCGGCGA TGTGGCTATA 
CAAAAGGCAG TCGTGGCGGT GTCCCCCGCC TCGCCCTCCG TGGTGGCCTC CACTTACACG 
TACCAGTTGG GCAGACTCGC CCCCCTTGAC AGCGCCCAGT TGCCCATCTC CTTCATTGTG 
CCAGCCACCT TCAGCGGCGC CATAGCCTTC ACCTACACCA TAACTTACAC CACTGAGCTG 
GGCACAAGTG CCACAACTCA GGGCACCTTC TACATACAGG CGTTGCAGAC GCCGGCGGTC 
AATATAACCA CGGTAAATGT AGTCCCCGCG ACCCCCGAGC CGCGCCGCAC ATTCTACGTA 
TCTATAACCA TAGTAAACAA GGGCTTCTCC CCAGTCTCCA ACCTCCAGGT GGAGGCAAGG 
GCGCCTCCAG GCATTAGGCC CATAACCTCG CCCATATACT TCGTCGGCAT CTTAGACACG 
CAGCAGACCA CAAACGTGCC CTTCAGCTTC AACGCCACAA GGCCCGGCAC TTACGAGATA 
GACTTCACAA TCTCTTACAC AGACCAGTAC GGCAACATTT ACACAATACC CTACAAGGTG 
ACGGTGACAG TCAGCAACTC CACCACGCGC TTCTTCCCAG GAGGCACCGC GCCGCCTGGC 
GCACGACAAC AGCAACAACA GCAGAGCCTG CCCCTCGCCA CAATAGCCGT TGCCATTGTC 
GCCGTTGTGG CCGTGGCCGC GGGCCTTGTG GTATACAGGA GACGGCATAG AAAGACGCAA 
CAATAG 

 

Protein sequence

MKKWLILAAL LAALAYSQAV VFTPKVDYLF LGAQWVQVPK FPGDVGVISL SFYLADQYVD 
VSISLSPQCP YLTALGSAQM PTAGPGVVTA TLKVMATALN ATCPTNVYLK ATYKASGSTL 
TNGIEKLEYV SVYIPPYPTA QVYAEGAAYV GLPSTVKLVV VSPYLLTGAV SVQGQGARVV 
APTGPVVVNS TRAEIPATLI ADSYTAALAV VINSRDWLGN PVTLTYTVPI SAAPPPPAVV 
SISPTMLSAN KYNAVNITVA LPIRANGTAT ATVAGGIMPQ SAVTFPIVNG VGKATVSVYP 
TASVVTFNVV ATYQAAGVAR TEQVAASAAV QQTFGGLSRL QVAPSKLIAG IANNVTLVVQ 
APGPFNVSVT VTGAASDKPS PYYFGGVDKA TANLLLTPLS TQPVSLTVYV YHSAGVDQYV 
VNLPVVSSSI FTVLPTPSVV KSGGNRTVTI TVINSGDVAI QKAVVAVSPA SPSVVASTYT 
YQLGRLAPLD SAQLPISFIV PATFSGAIAF TYTITYTTEL GTSATTQGTF YIQALQTPAV 
NITTVNVVPA TPEPRRTFYV SITIVNKGFS PVSNLQVEAR APPGIRPITS PIYFVGILDT 
QQTTNVPFSF NATRPGTYEI DFTISYTDQY GNIYTIPYKV TVTVSNSTTR FFPGGTAPPG 
ARQQQQQQSL PLATIAVAIV AVVAVAAGLV VYRRRHRKTQ Q