Gene Pcal_0642 details

Gene Information

• Locus tag: Pcal_0642
• ID: 4908660
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 604040
• End bp: 604690
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640124391
• Product: radical SAM domain-containing protein
• Protein accession: YP_001055534
• Protein GI: 126459256
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0602] Organic radical activating enzymes

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 37
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAGGGTCC TTGAGATATT CGCCTCGTTG CAGGGGGAGG GCGTCAACTT GGGCAAGCCG 
GCAGTCTTCG TGAGGCTGGC CGGATGTCCC ATTAGGTGCG TGTACTGCGA CACGGAGTAC 
TCTTGGGACT TCAACGGGGG CGTCGAGATG TCGCCGGGGG AGGCCGTGCG GCGCGCCGAG 
GAGCTGGGGG TGAGGGGCCA CGTGGTGGTG ACTGGGGGCG AGCCGCTTGT GTGGATGCGG 
AGGGGCCTCG AGGAGCTTGT CTGTGGGCTG AGGCGGCTTG GGGCGGTGGA GGTTGAGACC 
AGCGGAGTAT ACGCGCCTAC GCCCGAGCTA GACGCATGTG CGGACTTCTA CGACGTGTCT 
CCCAAGTTGT CTAACGCCGG GGTGAAGGCC CCCCTGAGCC CCTTCTACCC CAAGAGCCCC 
AAGGTGTGGT TTAAATTCGT AGTGGCGGAC GTGGCCGACG TGGAGGAGGC CCTGGCCTAC 
GTAAGGGAGA GGGGGATCCC CCTAGACAGA GTTATGCTAA TGCCCATGTC GAAGACGCCG 
GAGGAGCACG CCGAGGTCCT CAGGAGGATC TGGGACGCGG CAGTGAGGGC AGGCCTTAGG 
GTAACCCCGA GGCTCCACAT AGTGGCGTGG GGAAACGCGA GGGGCAAGTG A 

 

Protein sequence

MRVLEIFASL QGEGVNLGKP AVFVRLAGCP IRCVYCDTEY SWDFNGGVEM SPGEAVRRAE 
ELGVRGHVVV TGGEPLVWMR RGLEELVCGL RRLGAVEVET SGVYAPTPEL DACADFYDVS 
PKLSNAGVKA PLSPFYPKSP KVWFKFVVAD VADVEEALAY VRERGIPLDR VMLMPMSKTP 
EEHAEVLRRI WDAAVRAGLR VTPRLHIVAW GNARGK