| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0638 |
|---|
| Symbol | |
|---|
| ID | 4908230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 599503 |
|---|
| End bp | 601281 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640124386 |
|---|
| Product | translation initiation factor IF-2 |
|---|
| Protein accession | YP_001055530 |
|---|
| Protein GI | 126459252 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00491] translation initiation factor aIF-2/yIF-2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGA AGATTAGGTC GCCTTTCGTG GTTGTGATGG GGCACGTGGA TGTGGGGAAG
ACCCTCTTGT TGGACAAGAT TAGGGGCACC TCTGTGGCGT ATAGGGAGCC GGGCATGATC
ACGCAACATA TTGGCATGAG CCTTGTCCCG TGGCCGGCTG TGGAGAAGTT CGCGGGCCCC
CTCGTGGATA GGCTGAAGCT GAGGGGGAGG ATCTGGATAC CCGGCTTCCT CTTCATTGAC
ACGCCGGGCC ACGCCGCCTT TTCGAACTTG CGCAAGAGGG GCGGGTCAGT GGCCGACTTG
GCCATACTTG TGGTAGACAT TACGTCGGGT TTGGAGGACC AGGGTGTGGA GTCGCTTAAG
CTTATCCAGA GCAGGGGGGT CCCCTTCGTA ATTGCTGCAA ATAAGCTGGA CCGGATCTAT
GGCTGGAAGT CTGTGGAAAA CCGCCCGTTT CTCTTCGCGG TTGAGGAGCA GGAGTGGCAC
GCGGTGGCTA CGCTGGAGGA GCAGATAGGC AAGTTGATAA CGCAACTCGC AAACCTCGGC
ATAGACGCCG ACCGGTATGA CAGAGTGAGA GACTTCTCGA AGCAGGTGCC GATTGTCCCC
ACGAGCGCGG TCACCGGCGA GGGGGTGGCC GACCTGCTCC TGGTGCTTGC TGGGGTTAGC
CAGCGGTTTA TACCGCGGGA GAAGCTCCAA GTCAGAGACG GCCCCGCGCG CGGCGTCGTG
ATGGAGGTGA AGGAGGAGAG GGGCCTCGGG GTCGTGGCCG ACGTCATTTT GTACGACGGC
AAGCTGAGGA AGGGCGACGT GATAGTCACG GCGGGGCTAG ACGGGTCTCG GCAGGCCAAG
GTGAGGATGC TCATAATGCC GAAGTCGCTG GAGGAGATGC GGGACCCCGA GGACAAGTTC
ATGGCTGTGC AAGAGGTGGA GGCGGCGGCG GGCGTGAGGG TAGTGGCGGA GGGGCTTGAG
GGCGTGGTGG CGGGCGCCCC GCTTCTAGCC GTGTGGGACC CAAAGGACCT CCCCGAGGCG
CTTAAGAGCG TGGGGGAGGA GATAGCGGAG ATCAAAATAG AGTCGGACAA GGAGGGCGTA
ATCGTTAGAG CAGACACCTT CGGCACTCTG GAGAGCATAA TACTCTTCTT AAGACAGCAG
GGAGTCCCCG TCAGAAAGGC GGACGTGGGG CCGCCTACGC ACAAGGACGT GGTGGAGGCG
GTGCTGAGCA GGAGGAAGAA CCCCGCCTAC GGAGCAATCC TGGCCTTCAA CGTGAAAGTG
CCCCCGGAGG TGGAGACCGA GGCCCAGTCC TCTGGAGTGA AGATAATACG CGGGGAAATC
CTCTACCGCA TATTCGACGA GTACGTCAAG TGGTCTACCG AGGTGAAGAC GAAGACCGTT
GAGCAAGTGC TCTCCCAGCT CACCCGCCCC GCGAAAATCC AAATACTCCC CGGCTACGTG
TTTAGGAGGA GCGACCCGGC CATAGTGGGC GTGAAAGTGT TGGCCGGAAC GCTCAAGCCC
GGCGTCACCT TGGCCAAAGA CGGCAGAGAA GTGGGCAAGG TAATGCAGAT ACAGCGCCAG
GGCAAACCCG TCGCAGAGGC TGTGGCAGGC GACGAGGTGG CCATATCTAT ACAGGGAGAC
GTCATAGTGG GCCGTCAGAT AAAGGAGGGA GACGTGCTCT ACGTCTATAT CCCAGACGAG
CAGGCCAGAC AGTGGCTATT CCGCTACAAG CAGTACCTCA GAAAAGACGA GGTAGAGGCC
TTAGAGGAGT ACCTGAAGAC AAGAAAGAAG TCAGCATAA
|
|---|
| Protein sequence | MQQKIRSPFV VVMGHVDVGK TLLLDKIRGT SVAYREPGMI TQHIGMSLVP WPAVEKFAGP
LVDRLKLRGR IWIPGFLFID TPGHAAFSNL RKRGGSVADL AILVVDITSG LEDQGVESLK
LIQSRGVPFV IAANKLDRIY GWKSVENRPF LFAVEEQEWH AVATLEEQIG KLITQLANLG
IDADRYDRVR DFSKQVPIVP TSAVTGEGVA DLLLVLAGVS QRFIPREKLQ VRDGPARGVV
MEVKEERGLG VVADVILYDG KLRKGDVIVT AGLDGSRQAK VRMLIMPKSL EEMRDPEDKF
MAVQEVEAAA GVRVVAEGLE GVVAGAPLLA VWDPKDLPEA LKSVGEEIAE IKIESDKEGV
IVRADTFGTL ESIILFLRQQ GVPVRKADVG PPTHKDVVEA VLSRRKNPAY GAILAFNVKV
PPEVETEAQS SGVKIIRGEI LYRIFDEYVK WSTEVKTKTV EQVLSQLTRP AKIQILPGYV
FRRSDPAIVG VKVLAGTLKP GVTLAKDGRE VGKVMQIQRQ GKPVAEAVAG DEVAISIQGD
VIVGRQIKEG DVLYVYIPDE QARQWLFRYK QYLRKDEVEA LEEYLKTRKK SA
|
|---|
| |