| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0625 |
|---|
| Symbol | |
|---|
| ID | 4910111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 587677 |
|---|
| End bp | 589038 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640124373 |
|---|
| Product | 2-methylcitrate dehydratase |
|---|
| Protein accession | YP_001055517 |
|---|
| Protein GI | 126459239 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGAG TTACGAAAAC ACTTGCCGAA TATACGGCGT ATATTGATTT CTCCAAGGTT
CCCGCCGAGA CTCGGCATGA GGTAAAGAGG AGGATCATTG ACTCGGCGGC AGTTGCCTTC
GCGGCGTACA CCAGCGAGCC CGTAGCTCTT GCAAGGAGAG CGGCGTCTAG GTTCCCCACG
GCCGAGGGGG CTAGGATCTT GGGCACTCGT TACAAGGTCT CTCCCGACTG GGCCACCTTT
GTCAACGGCC TTATGATACG CTACCACGAC TTCAACGACA CATACCTCTC TAAGGAGCCG
CTTCACCCAA GTGACCTCAT TGGAGCCGCC CTCTCTGTGG GCGACTACGT GGGCGCGCGG
GGCACGGACT TGATAACGGC CGTGGCCTTA GGCTACGAGG CCTCAGTCAC TTTCTGCGAC
GGGGGGACGC TTAGGAAGAG GGGCTGGGAC CACGTGAACT TCCTCGGCAT AGGTAGCCTA
CTGGCCTCGG CCAAGTTGCT AGGCCTAGAC GTGGTTAAGA CGCAACACGC GTTGGCCATA
TACGCAGTGC CCCACGCCGC GATGCGCCAG ACTAGGGTTG GCGAGTTGTC CATGTGGAAG
GGCGCCGCGG CGGCTAACTC CAGCAGAAAC GCCGTCTTTG CGGCGCTGTT GGCCAAGGAG
GGCTTTACAG GGCCTTACAA GCCCTTTGAG GGAGAGATGG GGTTCTTCAA GCAGTTGTTA
CAGGGGGACT TCGACCTCTC TGTGTTAAAG AGACTGGAGG AGCTACAGCC GCCCCGCAGA
ATCCTAGACA CATACATCAA GCCCTACCCC GTGGAGTACC ACGCCCAGAC GGCCGTGGAG
GCGGCGCTTA AGCTCAGGGA GAAGGTGAGG CTAGACGAGA TTGAGAAGGT TAGGATAGAC
ACGTACGAGG CGGCGTACAC GATCATTGGG CCAAAGGATC CTGAGAAGTG GGACCCCCAC
ACCAAGGAGA CGGCCGACCA CTCCATCATG TGGGTCACCG CCGCCGCCCT CGTGTGGGGC
CCCATCAAGA TTGAGCACTA CCGCGACATT AGAAACCCAG CGGTACTCTC CCTAATGAAA
AAGATGGAAG TCAACCTAGA CCCCGAGTTA GACAAGCTCT ATCCACAAGC CTTCCCCACC
GTCATTACAG TTGTGACAAA GAGCGGCTCT AAATACACCG AAAGAGTCGA CTACGCAAAG
GGCCACCCCA AGAACCCAAT GACAGACGCC GAGCTAGAGC AGAAATTCAA CGAGCTAACA
CAAGGCATAC TCCCCGACGA AGTTAGAAAA AGAGCCCTAG ACATCATGTG GAACCTAGAG
AAATACTCAG TTGCCGATCT TCTAGAGGCC CTCGCCGTAT AA
|
|---|
| Protein sequence | MDRVTKTLAE YTAYIDFSKV PAETRHEVKR RIIDSAAVAF AAYTSEPVAL ARRAASRFPT
AEGARILGTR YKVSPDWATF VNGLMIRYHD FNDTYLSKEP LHPSDLIGAA LSVGDYVGAR
GTDLITAVAL GYEASVTFCD GGTLRKRGWD HVNFLGIGSL LASAKLLGLD VVKTQHALAI
YAVPHAAMRQ TRVGELSMWK GAAAANSSRN AVFAALLAKE GFTGPYKPFE GEMGFFKQLL
QGDFDLSVLK RLEELQPPRR ILDTYIKPYP VEYHAQTAVE AALKLREKVR LDEIEKVRID
TYEAAYTIIG PKDPEKWDPH TKETADHSIM WVTAAALVWG PIKIEHYRDI RNPAVLSLMK
KMEVNLDPEL DKLYPQAFPT VITVVTKSGS KYTERVDYAK GHPKNPMTDA ELEQKFNELT
QGILPDEVRK RALDIMWNLE KYSVADLLEA LAV
|
|---|
| |