| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0624 |
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| Symbol | |
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| ID | 4910143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 586750 |
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| End bp | 587670 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640124372 |
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| Product | 2,3-dimethylmalate lyase |
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| Protein accession | YP_001055516 |
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| Protein GI | 126459238 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase
[TIGR02319] carboxyvinyl-carboxyphosphonate phosphorylmutase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTGTTA AGAAAGGGAG GGTGGATGGG GCTAGGCTTC TCCGCGAGGA GCTCTCTAGG
CCTGGCATTG TCCTCGTGCC GGGTGTGTTT AACGCGCTTA CGGCTCTCAT GGCCCAGAGC
CTCGGGTTTA AGGCGGTGTA TGTGTCAGGC GCCGCCGTCA CTGCTTCAAT GGCGTTGCCA
GACCTCGGCT TAATTACGAT GGACGAGATG GTGAAGACGG TGAAGTATAT AACAGATGCG
GTTGATATAC CGGTTATAGT GGACATAGAC ACCGGATACG GGGAGGCGTT GAACGTGATG
AGGGCTGTCC GGGAGTTTGA GGCAGTTGGC GCGGCGGGGG TTCAGCTGGA GGACCAGGTA
TTGCCCAAGA AGTGCGGCCA CTTGACGGGG AAGGCGCTGA TACCCCCCGA CGAGATGGCA
AAGAAGATAA AGGCCGCTGT CGAGGCGAGG AGGAACCCCG ATTTTGTCAT CATTGCTAGG
ACAGACGCGG CTAATGTAAC AGGGTTTGAA GACGCGGTGC AACGCGCCCA GCTCTACTTA
GAGGCCGGCG CCGATGTGAT ATTCCCAGAG GCGCTCCGCA CGGAGGACGA GTTTAGGGAA
TTTGCGAAGA GGGTTAAGGC GCCTCTTTTG GCCAACATGA CAGAGTTCGG CGTGTCGCCG
CTTATCCCAG CCAAGAAGTT GGAAGAGTTC GGCTACAAGT TTGTGATATT CCCAGTCACG
GCGCTTAGGG TGGCCATGTA CGCCATTAGG GAGGTGTTTA AGACAATACT CGCCGAGGGC
ACTCAAGTGG CGTGGCTCGA CAAAATGTTC ACAAGGAAGG AGCTCTACGA GTTGATAAGG
TACTACGACT ATGAAAAACT GGACAGAGAA ATAGCCGAGA GCGTAGACCG CCTCATAAGA
GATAAAAAGG CGGTCCGTTA A
|
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| Protein sequence | MIVKKGRVDG ARLLREELSR PGIVLVPGVF NALTALMAQS LGFKAVYVSG AAVTASMALP
DLGLITMDEM VKTVKYITDA VDIPVIVDID TGYGEALNVM RAVREFEAVG AAGVQLEDQV
LPKKCGHLTG KALIPPDEMA KKIKAAVEAR RNPDFVIIAR TDAANVTGFE DAVQRAQLYL
EAGADVIFPE ALRTEDEFRE FAKRVKAPLL ANMTEFGVSP LIPAKKLEEF GYKFVIFPVT
ALRVAMYAIR EVFKTILAEG TQVAWLDKMF TRKELYELIR YYDYEKLDRE IAESVDRLIR
DKKAVR
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