Gene Pcal_0620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0620 
Symbol 
ID4909623 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp584466 
End bp585179 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content48% 
IMG OID640124368 
Producthypothetical protein 
Protein accessionYP_001055512 
Protein GI126459234 
COG category[S] Function unknown 
COG ID[COG4920] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCACG GCCCCTACAT GAGGAGGTTG CTAATCTCGC TGGCATCTAT ACTGGCCTTC 
TCTGCAATTC TCACATTCTA CCCCGGCGAA TATTTCACAG CTATTCTGCT CTACTTTGTG 
CTATTCTTCG GAATAACTAT CGCCATGGGT TTAAGAACCT ATAGAAGAGG CATGGCTACA 
GTCCAGGAAA TATCCAAGGG GAAGCCCCTC CTCGAAATAG ACGAGAAAGA GGTGGGGAAA 
GTCATGGAAA AAGACAAAGA GCTTGTAGCA GAGTATAGAA GGCTCACTCG CTCCTCGCTC 
ATACCGCTAC TACTCCTCCC AGCCTTCATG GTGTTGGCCA CGGTCCTCTT CCCCACTCTC 
CCGCCGCTCT TGGAATCTAC GGCGGGGCCC GTAATAGGCG CCTACCCCGC CAGATTTCTC 
GCCTACGTCA CAATATTTTC AATATTCTCC GCTATCTCGA TGCTCTTGTT CAAGCCCCCC 
ACAATGCCCA GGATAGTGAG AAACGTCAAG ATATACGAGG GCGGAATGGT GGTAGACAAG 
GTGGTCGGGC TCAAGGCCCC CATCGAGGTA GAGGAATACA CCGTCAACCC AGAGCGGCGA 
TTTATACAAT TTAAACTAAA TAACCAGATA TTTAGAATAT ATTACAAAGA CGTAAAAGAA 
CTTGACAGTA TTTTACTAAA AATTATAAAG CCCTTAAAAC AGCGAAGCCA GTGA
 
Protein sequence
MRHGPYMRRL LISLASILAF SAILTFYPGE YFTAILLYFV LFFGITIAMG LRTYRRGMAT 
VQEISKGKPL LEIDEKEVGK VMEKDKELVA EYRRLTRSSL IPLLLLPAFM VLATVLFPTL 
PPLLESTAGP VIGAYPARFL AYVTIFSIFS AISMLLFKPP TMPRIVRNVK IYEGGMVVDK 
VVGLKAPIEV EEYTVNPERR FIQFKLNNQI FRIYYKDVKE LDSILLKIIK PLKQRSQ