Gene Pcal_0566 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0566 
Symbol 
ID4910242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp537413 
End bp538429 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content51% 
IMG OID640124314 
Product3-dehydroquinate synthase 
Protein accessionYP_001055459 
Protein GI126459181 
COG category[C] Energy production and conversion 
COG ID[COG0371] Glycerol dehydrogenase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAAAGG TTGAGCGATT TGAAGTACCT AGGACCATAA TATTTGGACC CGGCGCCTTA 
GAGAAGACGC CAGAGGTAAT ACCCCCCTCC GGCAGAGTAC TCATTATCAC TGGGAAATCC
TCCACGCGTA AATACGCCGA GCGAGTGGCA GAGCTGTTAA AGCAAAACTG TGAAATAATC
AGCTACGACC AAGTCGAGCT GGAGAAGCCC GGCTTCGACC TAGTAATAGG AATAGGAGGA
GGGAGGCCGT TGGACATGGC AAAGGTGTAC TCCTACATAC ATAAGAAGCC GTTTGTAGCA
ATTCCCACGT CCGCCAGCCA CGACGGAATT GCTTCTCCAT ACGTCTCCTT CTCTCTTACA
CAGCGCTTCT CGAAATACGG CAAAATATCC TCCTCCCCCG TGGCAATAAT AGCAGACACA
TCCATCATAC TAAGTGCGCC ATCGCGGCTT CTAAAGGCTG GCATAGGCGA CCTCTTGGGA
AAAATTATTG CAGTTAGAGA TTGGCAACTT GCCCATAGGC TAAAGGGCGA GGAGTACAGT
GAATATGCGG CACACCTGTC TCTCACAAGC TACAAGATAG CGGTAGGAAA CGCCCAGAAG
ATAAAAAACT TCATCCGCGA AGAAGACGTC AGAGTCCTTG TAAAGGCCCT CATCGGCTGC
GGAGTCGCAA TGGGGATAGC CGGCTCGTCA AGGCCTTGTA GCGGCTCTGA ACACCTCTTT
GCCCACGCAA TAGAGGTGAG AGTTGAGAAA GAAGACGAGG TTGTACACGG AGAATTAGTG
GCCCTTGGCA CAATTATCAT GGCCTATCTA CACGGCATAA ACTGGAGACG CATCAAGAGG
ATAGCGGACA TAATAGGCCT CCCTACGTCA CTACGTCAGG CGAATATAGA CGTGGATCTA
GCCCTAGAGG CCTTGACCAC CGCCCACACC CTCAGACCAG ATAGATATAC TATACTCGGG
GACGGCCTCA GTAGAGAAGC CGCCAAGAGG GCGCTGGAGG ACGTGGAACT TATATAA
 
Protein sequence
MKKVERFEVP RTIIFGPGAL EKTPEVIPPS GRVLIITGKS STRKYAERVA ELLKQNCEII 
SYDQVELEKP GFDLVIGIGG GRPLDMAKVY SYIHKKPFVA IPTSASHDGI ASPYVSFSLT
QRFSKYGKIS SSPVAIIADT SIILSAPSRL LKAGIGDLLG KIIAVRDWQL AHRLKGEEYS
EYAAHLSLTS YKIAVGNAQK IKNFIREEDV RVLVKALIGC GVAMGIAGSS RPCSGSEHLF
AHAIEVRVEK EDEVVHGELV ALGTIIMAYL HGINWRRIKR IADIIGLPTS LRQANIDVDL
ALEALTTAHT LRPDRYTILG DGLSREAAKR ALEDVELI