| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0560 |
|---|
| Symbol | |
|---|
| ID | 4909899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 531066 |
|---|
| End bp | 531947 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640124307 |
|---|
| Product | 2-oxoacid ferredoxin oxidoreductase subunit beta |
|---|
| Protein accession | YP_001055453 |
|---|
| Protein GI | 126459175 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit |
|---|
| TIGRFAM ID | [TIGR02177] 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAC AGCTAAAGCC CCAGGACTAC GCCGTCAATA GGCCGCCCAT CTGGTGCCCC
GGCTGCGGAG ACTACGGCAT ATTAGAGGCG CTTAGGAGGG CCCTGGCGGA GCTCTCTGTG
CCAAACCACG AGGTAGTCGT GGTCTCAGGC ATAGGCTGCA GCTCGCAACT ACCCCACTTC
ATGAAGACGT ACGGCATACA CGGCATACAC GGGAGAGCAG TGGCCATAGC CACAGGCGTT
AAACTGGCAA ATCCAAGGCT CAAGGTAGTC GTGGTAGGCG GAGACGGAGA CGGCTATGGA
ATTGGGCTAA ACCACATGAT ACACGCCGCC AGGCGCAACG TGGGGCTGAC GTACATAGTG
TCCAACAACC AGGTATACGG ACTCACCACT GGCCAAATGT CGCCAACCAC TCTGAGAGGC
GTGAAGACTA AGACGACGCC CTTCGGCGCA ATAGACGAGC CGGTAAACCC ACTCGCACTG
GCCCTAGCCG CCGGGGCCAC CTTCGTGGCA AGAGGATTCA GCGGAGACAT CGCCCACTTG
ACCACAGTGA TTAAAAAGGC CCTAACCCAC AGAGGCTTCG CGCTAGTAGA CGTCCTAAGC
CCCTGCGTCA CTTTCAACAG AATAAACACA TACGACTGGT TCAGAGCCCG CGTGTACAAG
CTAGAGGAGG CGGGCCACGA CCCCTCCAAC TACTACGAGG CCTACAAACG GGCACTTGAG
TGGCCAACCC TGGACCCCTA CGGAAAAATC CCAATAGGCA TCTTCTACGC CACAGAAGAC
AAGCCCACCT ATGAGGAGGA GTGGGTAAAA CTGCTGGGCG GCGCCCCAAT AGACCAAAAA
CTTCAGCCAA ATCCCGCGGA GGTACTGAAG GCGTTTCAAT AG
|
|---|
| Protein sequence | MKIQLKPQDY AVNRPPIWCP GCGDYGILEA LRRALAELSV PNHEVVVVSG IGCSSQLPHF
MKTYGIHGIH GRAVAIATGV KLANPRLKVV VVGGDGDGYG IGLNHMIHAA RRNVGLTYIV
SNNQVYGLTT GQMSPTTLRG VKTKTTPFGA IDEPVNPLAL ALAAGATFVA RGFSGDIAHL
TTVIKKALTH RGFALVDVLS PCVTFNRINT YDWFRARVYK LEEAGHDPSN YYEAYKRALE
WPTLDPYGKI PIGIFYATED KPTYEEEWVK LLGGAPIDQK LQPNPAEVLK AFQ
|
|---|
| |