| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0548 |
|---|
| Symbol | hppA |
|---|
| ID | 4909905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 520579 |
|---|
| End bp | 522735 |
|---|
| Gene Length | 2157 bp |
|---|
| Protein Length | 718 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640124295 |
|---|
| Product | membrane-bound proton-translocating pyrophosphatase |
|---|
| Protein accession | YP_001055441 |
|---|
| Protein GI | 126459163 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3808] Inorganic pyrophosphatase |
|---|
| TIGRFAM ID | [TIGR01104] vacuolar-type H(+)-translocating pyrophosphatase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTATAC CCATATTTGG GCTCATAGTT GGTGCTATAG GAGTTGTATA TGCTATATAC
CTCGCCAGAT GGGTTCTTAG CCAAGACCCT GGGAATGAGA AAATGCGCTT TATTTCACAG
GCTATTGCCA CAGGCGCTAG GGCGTATCTC TTTAGGCAAT ATAGAACCTT GGCGATACTC
CTGGCGGTAC TGGCCGTGTT GATACTAATA GCAATAGATC TTCCTCGTGG CACAAATGGC
TTGACGGCTC TTGGCTTTGT TGTTGGCGCT CTCGGCTCCA TGTTGGCGGG GTACCTAGGC
ATGTATGTCA CAACTCGGTC GGCTTCGCGT GTTGCGCAGG CGGCGGCCAT AGGCGGGATG
GGGAAGGCTC TACTTGTCTC GTGGCGCGCT GGCGCTGTTA TGGGTCTATC GCTTGCGGGC
ATCGCGCTTC TCTTAATCTC AGGATTTTAC CTAGCCTTCA GGGCTGTGAC ATCTGACTGG
GCAGTGCCGC TGGTGGCCCT TGGGTTTGGG GCAAGCTTGG TGACGTTGTT CATGCGTGTC
GGCGGCGGGA TTTACACAAA GGCGGCCGAC CTCGGCGCAG ATCTCGTGGG CAAGATAGAG
GCTGGCATTC CTGAAGACGA CCCAAGGAAC CCCGGCGTCA TTGCAGACAA CGTCGGAGAC
AACGTCGGCG ACGTAGCTGG CATGGCCGCC GACGTCTACG AGTCTTACAT TGTCACAGTG
ACCGCCGCCA TATTTCTCGC CGCCATCCTC GGGCTAGCGT CGGCATATAT AGACGCCATA
ATTCTCTTTG CGGCTCTGGC CCTTATTGCC ACGTTTATCG GAGTCAACCT GTTAAAAACC
ACCGGGGTCA AGCACCCGCT CTCCTCTATA AACATGGCGG TGTACTTCAC CATAGGCATA
GCAATAGTCC TGTTTTTTGC AGGCACGTTT GTCCTAGGCC TAGACTTTGC GAAAGCCGCC
GCGCTCGCGG CCGCGGCTTC TTTGGGCGCC GCGCTGGCCC CCATTATTGT CAAAATAACG
GACTACTACA CCTCGTATAA CTACGGCCCT GTCAGGAGAA TAGCGGAGCA GGCCAAGATA
AGTCCCGCCA CAGTCATAAT AACGGGATAC GGTGAGGGCC TAATGAGCGC GATACCAGTA
ATTGCTATAA TAGTGGCCGT GCTCGGCGTG TCGTATGCAA TAGGCTACTA CACAGTCCCC
GTACAGGGCT TTGGAGAATG GTCTAAATAC CTAGCTGGGA TTTTCGGCAC CGCGATAGCC
AGCGTGGGTC TCTTGGTGGT CGCCGGTATA ATAATAACTG CGGACTCCTA CGGTCCAGTC
TCAGACAACG CCAACGGCGT TGTGGAAATG GCAGGCCTGC CTGAGAGCGT GCGCGAGGTA
ACGGATGTGC TCGACAGCGT TGGCAACACT ACAAAGGCGA CGACAAAGGG CTATGCTATA
GCAAGCGCGG CGCTGGCGGC GTTGGTCTTA TTCATAGCGT TGATATTCGA AATAGTTCAA
GCATACTCGA AGATTGTGGG CACCACAAAC CTTGTAGCAG TGCTCTCGGA CAGCTTAAGA
GGTCTTTCAA TTATAAACGT AAATGTACTA ATTGGCGCAT TTATCGGAGT CTCTCTCGTC
TACTTCTTCA CGAGTCGTAC TCTGGGAGCA GTGGGGCGCA CCGCGATGGA GATAGTGGAA
GAGATTAGGC GTCAGTTTAG GGAGAAGCCG GGCATCCTCG AGTGGAAGGA GCAGCCTGAC
TACGCCAGGG TTGTGGATAT TGCGACAAGG CGCGCGCTGG GCGAGTTCCT AGTGCCAGGC
CTAGCCGCCA TAGTGGTTCC TCTGTTGACC GGGCTGGTTC TGGGCTGGAA CGCGTTGGCT
GGGCTAATCA TGGGCGCAAT AGTGGCCGGA GTCCCCCGTG CCCTCCTTAT GGCCAACGCC
GGCGGCGCTT GGGATAACGC AAAGAAGTAC ATAGAGCTAC AGGGGCTTAA GAAGACCGAG
ATGCACAAGG CCGCGGTCAT CGGCGACACA GTGGGCGATC CGTTTAAAGA CACGTCGGGC
CCCTCGCTGA ACCCGCTCAT AAAGGTGTTA AACACGTTGT CTGTGGTCTT CGCCTACGCC
ATAGTGCTGG CAAACGTGGC GTTGGGCATA TACCCAATGG GCCTACTGCC ATTTTAA
|
|---|
| Protein sequence | MFIPIFGLIV GAIGVVYAIY LARWVLSQDP GNEKMRFISQ AIATGARAYL FRQYRTLAIL
LAVLAVLILI AIDLPRGTNG LTALGFVVGA LGSMLAGYLG MYVTTRSASR VAQAAAIGGM
GKALLVSWRA GAVMGLSLAG IALLLISGFY LAFRAVTSDW AVPLVALGFG ASLVTLFMRV
GGGIYTKAAD LGADLVGKIE AGIPEDDPRN PGVIADNVGD NVGDVAGMAA DVYESYIVTV
TAAIFLAAIL GLASAYIDAI ILFAALALIA TFIGVNLLKT TGVKHPLSSI NMAVYFTIGI
AIVLFFAGTF VLGLDFAKAA ALAAAASLGA ALAPIIVKIT DYYTSYNYGP VRRIAEQAKI
SPATVIITGY GEGLMSAIPV IAIIVAVLGV SYAIGYYTVP VQGFGEWSKY LAGIFGTAIA
SVGLLVVAGI IITADSYGPV SDNANGVVEM AGLPESVREV TDVLDSVGNT TKATTKGYAI
ASAALAALVL FIALIFEIVQ AYSKIVGTTN LVAVLSDSLR GLSIINVNVL IGAFIGVSLV
YFFTSRTLGA VGRTAMEIVE EIRRQFREKP GILEWKEQPD YARVVDIATR RALGEFLVPG
LAAIVVPLLT GLVLGWNALA GLIMGAIVAG VPRALLMANA GGAWDNAKKY IELQGLKKTE
MHKAAVIGDT VGDPFKDTSG PSLNPLIKVL NTLSVVFAYA IVLANVALGI YPMGLLPF
|
|---|
| |