Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_0546 |
Symbol | |
ID | 4909024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 518375 |
End bp | 519016 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640124293 |
Product | CRISPR-associated exonuclease Cas4 family protein |
Protein accession | YP_001055439 |
Protein GI | 126459161 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1468] RecB family exonuclease |
TIGRFAM ID | [TIGR00372] CRISPR-associated protein Cas4 |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACTGC TATCTCCTAA GCCGCTCTGT AGCGTCGTAA ACTGTGAAGA CTTGGAGAAG CTCGACCACG TCAGCGCCTT GAACGAGCTG AGGAGAGAAC AGGAGATATT CAAGTTGCTT CCGGGGATCT ACGCACATAG GTACGACTTC AGACGTGTCT CTCCCTCAAT TATAAACGAC TTTGAATATT GCCCCCGCCT ACTGTGGGTT CAGCACAAGC TCGGGCTCAA GTTGCTCAGC GAGAAGTCGG TGGTGTCCAT AATAAGGGGT AGAATTCTGC ACGAGAGATA CGAACGGCTC CTCTCTCAGT ACGAGAACGT GGTTGCTGAG TACAAGGTTG AGATAGGCGA CCTCGTGGGC GTAGTGGACT TGGTGATTAA ACGCGGCGGC GAGTATATAC CTGTTGAGAT AAAGACTGGC TTCAGCAAGG AGGCTCACAA GACTCAGCTA CAGATATACA TATCTATGTT GAAGGCCCGT TTCGGCTACC TGGTATACAG AAACCACGTG GAGGTAGTAC ACAGGAACGA CGCCGCGCTT GACGTGCTTA AGAAAATACG TGAAATTCTC AGCGCCAGAG AAGCGCCGCC GGCAAAATGC AATAGCTGTA TATTTAAACC CATATGTAAA AATCTTCTAT AG
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Protein sequence | MELLSPKPLC SVVNCEDLEK LDHVSALNEL RREQEIFKLL PGIYAHRYDF RRVSPSIIND FEYCPRLLWV QHKLGLKLLS EKSVVSIIRG RILHERYERL LSQYENVVAE YKVEIGDLVG VVDLVIKRGG EYIPVEIKTG FSKEAHKTQL QIYISMLKAR FGYLVYRNHV EVVHRNDAAL DVLKKIREIL SAREAPPAKC NSCIFKPICK NLL
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