Gene Pcal_0487 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0487 
Symbol 
ID4908291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp467122 
End bp467976 
Gene Length855 bp 
Protein Length284 aa 
Translation table11 
GC content37% 
IMG OID640124236 
Productglycosyl transferase family protein 
Protein accessionYP_001055383 
Protein GI126459105 
COG category[R] General function prediction only 
COG ID[COG1216] Predicted glycosyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.843285 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGAGC CATTAGTATC AATAATAATA CCTACACGCA ACTCAGAGAA GACACTGCCC 
CTATGTTTAA GATCTATTGA AAAACAGACA TATAAAAATA TTGAAGTAAT TGTAGTAGAC
AATTACAGCA AAGACAAGAC TGTAGAAATT GCGAAATCCT ATGGTGCGAG AGTGTACTTC
AAGGGCCCTG AACGGTCTGC GCAAAAAAAC TTTGGTGCAC TCAAGGCCCA GGGAGACTAC
GTCTACTTCA TAGACGCAGA CTTCGTCCTC CACGCCCGCG TAGTAGAGGA AGCGGTCTCC
TTAGCTAAGG AGGGATACGA CGCAGTAGTA ATTTTGAACA TAAGCGATCC TCGCCCTAGT
CTTGTGGCAA AGATTAGGTT TTATGAAAGA TTGAGTTATT ACGGCAGTGA AATGTATGAA
GCAGCGAGGT TTATTAAGAA AGATCTTTTT TTAAAAGTTG GCGGTTTTGA TATAAGGCTT
TACGCAAATG AAGATTATGA ACTCCATCAA AGACTTCTAA GGGCTGGTGC AAAGATTGCC
AAAACAAAAA ATAGTTTTGA AATACATATA GGTGAACCGT CAAGTATAAA AGAATTCATA
ATTAAGAATT TGTATTATGC ATCAAATATT AGTACATACT TTAGGAAAAA TCCAAATATT
CGCCATATGA CACCTTTAAG GCCCACTTTC TTTAGGAAGA GCTTTATAGG ACACCTTGGG
AGGAAATGGT TGCCAGGCCT ATTTTTAGTG ATTCTATTCA AAGTTTTACA AGCCACTGTA
ATAGGGTTAG GTATTTTAAT AAAGTCCAAC GTTTTACCAT ATGAGAATAT ACAAAAACTT
AGAAGAGTAA TTTAA
 
Protein sequence
MTEPLVSIII PTRNSEKTLP LCLRSIEKQT YKNIEVIVVD NYSKDKTVEI AKSYGARVYF 
KGPERSAQKN FGALKAQGDY VYFIDADFVL HARVVEEAVS LAKEGYDAVV ILNISDPRPS
LVAKIRFYER LSYYGSEMYE AARFIKKDLF LKVGGFDIRL YANEDYELHQ RLLRAGAKIA
KTKNSFEIHI GEPSSIKEFI IKNLYYASNI STYFRKNPNI RHMTPLRPTF FRKSFIGHLG
RKWLPGLFLV ILFKVLQATV IGLGILIKSN VLPYENIQKL RRVI